Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FAM45BP Gene

Aliases for FAM45BP Gene

  • Family With Sequence Similarity 45 Member B, Pseudogene 2 5
  • Family With Sequence Similarity 45, Member B 2 3
  • Family With Sequence Similarity 45, Member B (Pseudogene) 2
  • Family With Sequence Similarity 45, Member A Pseudogene 3
  • FAM45B 3
  • HT011 3
  • FAM45 4

External Ids for FAM45BP Gene

Previous HGNC Symbols for FAM45BP Gene

  • FAM45B

Summaries for FAM45BP Gene

GeneCards Summary for FAM45BP Gene

FAM45BP (Family With Sequence Similarity 45 Member B, Pseudogene) is a Pseudogene.

Additional gene information for FAM45BP Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM45BP Gene

Genomics for FAM45BP Gene

GeneHancer (GH) Regulatory Elements for FAM45BP Gene

Promoters and enhancers for FAM45BP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI130496 Enhancer 0.2 Ensembl 550.8 +1.4 1360 0.6 FAM45BP GC0XP130482 LOC100130684
GH0XI129980 Promoter/Enhancer 1.5 Ensembl ENCODE 4 -512.4 -512441 5.4 HDGF PKNOX1 ARID4B SIN3A ZNF2 YY1 POLR2B ZNF766 ZNF143 ZNF263 ZNF280C RBMX2 BCORL1 ELF4 FAM45BP PIR40748
GH0XI130523 Promoter/Enhancer 1.2 Ensembl ENCODE 0.3 +29.2 29160 0.6 KLF1 PKNOX1 ATF1 ZBTB40 ZNF335 GLIS2 POLR2A PATZ1 VEZF1 CREM LOC100130684 ENOX2 FAM45BP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FAM45BP on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAM45BP Gene

Genomic Locations for FAM45BP Gene
chrX:130,494,941-130,497,448
(GRCh38/hg38)
Size:
2,508 bases
Orientation:
Plus strand
chrX:129,628,915-129,631,422
(GRCh37/hg19)

Genomic View for FAM45BP Gene

Genes around FAM45BP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM45BP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM45BP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM45BP Gene

Proteins for FAM45BP Gene

  • Protein details for FAM45BP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6NSW5-FA45B_HUMAN
    Recommended name:
    Putative protein FAM45B
    Protein Accession:
    Q6NSW5
    Secondary Accessions:
    • Q5H9G7
    • Q9NZ36

    Protein attributes for FAM45BP Gene

    Size:
    357 amino acids
    Molecular mass:
    40514 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAF67650.1; Type=Frameshift; Positions=353; Evidence={ECO:0000305};

neXtProt entry for FAM45BP Gene

Post-translational modifications for FAM45BP Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM45BP Gene

Domains & Families for FAM45BP Gene

Protein Domains for FAM45BP Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM45BP Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6NSW5

UniProtKB/Swiss-Prot:

FA45B_HUMAN :
  • Belongs to the FAM45 family.
Family:
  • Belongs to the FAM45 family.
genes like me logo Genes that share domains with FAM45BP: view

No data available for Gene Families for FAM45BP Gene

Function for FAM45BP Gene

genes like me logo Genes that share phenotypes with FAM45BP: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM45BP Gene

Localization for FAM45BP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM45BP Gene

Pathways & Interactions for FAM45BP Gene

SuperPathways for FAM45BP Gene

No Data Available

Interacting Proteins for FAM45BP Gene

Selected Interacting proteins: Q6NSW5-FA45B_HUMAN for FAM45BP Gene via IID

Symbol External ID(s) Details
ALDH2
TMEM256

Gene Ontology (GO) - Biological Process for FAM45BP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM45BP Gene

Drugs & Compounds for FAM45BP Gene

No Compound Related Data Available

Transcripts for FAM45BP Gene

mRNA/cDNA for FAM45BP Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM45BP Gene

No ASD Table

Relevant External Links for FAM45BP Gene

GeneLoc Exon Structure for
FAM45BP
ECgene alternative splicing isoforms for
FAM45BP

Expression for FAM45BP Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM45BP Gene:

FAM45BP
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM45BP Gene

Orthologs for FAM45BP Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM45BP Gene

Organism Taxonomy Gene Similarity Type Details
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.2957 33
Species where no ortholog for FAM45BP was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FAM45BP Gene

ENSEMBL:
Gene Tree for FAM45BP (if available)
TreeFam:
Gene Tree for FAM45BP (if available)

Paralogs for FAM45BP Gene

No data available for Paralogs for FAM45BP Gene

Variants for FAM45BP Gene

Sequence variations from dbSNP and Humsavar for FAM45BP Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1000780780 -- 130,495,272(+) A/G non_coding_transcript_variant
rs1001230255 -- 130,493,527(+) C/A upstream_transcript_variant
rs1002975194 -- 130,496,665(+) G/A/C non_coding_transcript_variant
rs1008035454 -- 130,493,568(+) C/T upstream_transcript_variant
rs1008067950 -- 130,494,007(+) A/G upstream_transcript_variant

Additional Variant Information for FAM45BP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM45BP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FAM45BP Gene

Disorders for FAM45BP Gene

No disorders were found for FAM45BP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM45BP Gene

Publications for FAM45BP Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  3. Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning. (PMID: 10931946) Hu RM … Chen JL (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 4 58
  4. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58
  5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P … Vidal M (Genomics 2007) 3 58

Products for FAM45BP Gene

Sources for FAM45BP Gene

Content
Loading form....