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Aliases for FAM43B Gene

Aliases for FAM43B Gene

  • Family With Sequence Similarity 43 Member B 2 3 5
  • Family With Sequence Similarity 43, Member B 2

External Ids for FAM43B Gene

Previous GeneCards Identifiers for FAM43B Gene

  • GC01P020624
  • GC01P020751
  • GC01P020878
  • GC01P019124

Summaries for FAM43B Gene

GeneCards Summary for FAM43B Gene

FAM43B (Family With Sequence Similarity 43 Member B) is a Protein Coding gene. An important paralog of this gene is FAM43A.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM43B Gene

Genomics for FAM43B Gene

Regulatory Elements for FAM43B Gene

Enhancers for FAM43B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F020474 1.7 FANTOM5 Ensembl ENCODE 16.7 -71.4 -71358 13.8 PKNOX1 MLX ARID4B DMAP1 ZNF2 YY1 SLC30A9 ZNF548 FOS PAF1 MUL1 DDOST FAM43B ENSG00000226487 ENSG00000226664 LINC01757 HSPE1P27 CROCCP5 ENSG00000228823 ENSG00000236009
GH01F020610 1.2 Ensembl ENCODE 11.4 +60.5 60546 4.2 PKNOX1 ARID4B SIN3A DMAP1 ZNF48 YY1 ZNF121 GATA2 FOS MIER2 PINK1 CDA OTUD3 MIR6084 FAM43B DDOST GC01P020619
GH01F020588 0.9 ENCODE 11.2 +37.2 37217 2.8 PKNOX1 KLF17 RAD21 YY1 CREM EGR2 THAP11 SMARCA5 ZNF280D CEBPB CDA PINK1 MIR6084 FAM43B MUL1 GC01P020619
GH01F020493 1.2 Ensembl ENCODE 8.1 -56.6 -56638 4.8 HDGF ARID4B ZNF2 ZNF121 GLIS2 ZNF143 FOS DEK ZNF263 MXD4 OTUD3 NBPF2P FAM43B MUL1 GC01M020501 PIR53014 CAMK2N1
GH01F020551 0.9 ENCODE 10 -0.3 -257 1.8 TBP ZFP64 ARID4B THRB ZNF48 GLIS2 GATA4 CREM MIXL1 THAP11 FAM43B MUL1 GC01P020552 PIR52351
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM43B on UCSC Golden Path with GeneCards custom track

Promoters for FAM43B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001518086 161 401 SAP130 ZFP64 ARID4B HIC1 ZNF664 GLIS2 POLR2A PATZ1 PRDM10 NR2F6

Genomic Location for FAM43B Gene

Chromosome:
1
Start:
20,552,439 bp from pter
End:
20,555,020 bp from pter
Size:
2,582 bases
Orientation:
Plus strand

Genomic View for FAM43B Gene

Genes around FAM43B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM43B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM43B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM43B Gene

Proteins for FAM43B Gene

  • Protein details for FAM43B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZT52-FA43B_HUMAN
    Recommended name:
    Protein FAM43B
    Protein Accession:
    Q6ZT52
    Secondary Accessions:
    • A5PKT8
    • A5PL01

    Protein attributes for FAM43B Gene

    Size:
    329 amino acids
    Molecular mass:
    36776 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM43B Gene

Post-translational modifications for FAM43B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM43B Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FAM43B Gene

Domains & Families for FAM43B Gene

Protein Domains for FAM43B Gene

Suggested Antigen Peptide Sequences for FAM43B Gene

Graphical View of Domain Structure for InterPro Entry

Q6ZT52

UniProtKB/Swiss-Prot:

FA43B_HUMAN :
  • Belongs to the FAM43 family.
Family:
  • Belongs to the FAM43 family.
genes like me logo Genes that share domains with FAM43B: view

No data available for Gene Families for FAM43B Gene

Function for FAM43B Gene

genes like me logo Genes that share phenotypes with FAM43B: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FAM43B Gene

Localization for FAM43B Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FAM43B gene
Compartment Confidence
cytosol 3
nucleus 2
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM43B Gene

Pathways & Interactions for FAM43B Gene

SuperPathways for FAM43B Gene

No Data Available

Interacting Proteins for FAM43B Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000331397%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000331397 for FAM43B Gene via STRING

Symbol External ID(s) Details
UBC

Gene Ontology (GO) - Biological Process for FAM43B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM43B Gene

Transcripts for FAM43B Gene

mRNA/cDNA for FAM43B Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(10) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM43B Gene

Family with sequence similarity 43, member B:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM43B Gene

No ASD Table

Relevant External Links for FAM43B Gene

GeneLoc Exon Structure for
FAM43B
ECgene alternative splicing isoforms for
FAM43B

Expression for FAM43B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM43B Gene

mRNA differential expression in normal tissues according to GTEx for FAM43B Gene

This gene is overexpressed in Adrenal Gland (x7.2).

Protein differential expression in normal tissues from HIPED for FAM43B Gene

This gene is overexpressed in Adipocyte (68.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FAM43B Gene



Protein tissue co-expression partners for FAM43B Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of FAM43B Gene:

FAM43B

SOURCE GeneReport for Unigene cluster for FAM43B Gene:

Hs.429179
genes like me logo Genes that share expression patterns with FAM43B: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for FAM43B Gene

Orthologs for FAM43B Gene

This gene was present in the common ancestor of animals.

Orthologs for FAM43B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM43B 34 35
  • 99.8 (n)
cow
(Bos Taurus)
Mammalia FAM43B 34 35
  • 94.6 (n)
rat
(Rattus norvegicus)
Mammalia Fam43b 34
  • 92.07 (n)
mouse
(Mus musculus)
Mammalia Fam43b 34 16 35
  • 91.77 (n)
oppossum
(Monodelphis domestica)
Mammalia FAM43B 35
  • 90 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FAM43B 35
  • 77 (a)
OneToOne
chicken
(Gallus gallus)
Aves LOC100858896 34
  • 72.16 (n)
FAM43B 35
  • 69 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii fam43b 34 35
  • 58.97 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG8312 35
  • 12 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea F52D10.2 35
  • 21 (a)
OneToMany
Species where no ortholog for FAM43B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for FAM43B Gene

ENSEMBL:
Gene Tree for FAM43B (if available)
TreeFam:
Gene Tree for FAM43B (if available)

Paralogs for FAM43B Gene

Paralogs for FAM43B Gene

(1) SIMAP similar genes for FAM43B Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with FAM43B: view

Variants for FAM43B Gene

Sequence variations from dbSNP and Humsavar for FAM43B Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10799637 -- 20,555,261(+) ACATG(C/T)GCCAG downstream-variant-500B
rs10916812 -- 20,551,708(+) TCACC(A/C)GGGCC upstream-variant-2KB
rs10916813 -- 20,551,955(+) CCAAG(A/T)GTACC upstream-variant-2KB
rs111802442 -- 20,552,663(+) GGTGG(A/G)CGTCC utr-variant-5-prime
rs114688093 -- 20,554,809(+) GACGC(A/G)GCAGA utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for FAM43B Gene

Variant ID Type Subtype PubMed ID
nsv1076225 CNV deletion 25765185
nsv545731 CNV gain 21841781

Variation tolerance for FAM43B Gene

Gene Damage Index Score: 0.53; 11.56% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FAM43B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM43B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM43B Gene

Disorders for FAM43B Gene

Relevant External Links for FAM43B

Genetic Association Database (GAD)
FAM43B
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM43B

No disorders were found for FAM43B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM43B Gene

Publications for FAM43B Gene

  1. Expression of a novel gene FAM43B repressing cell proliferation is regulated by DNA methylation in hepatocellular carcinoma cell lines. (PMID: 21461611) Xu X. … Han Z.G. (Mol. Cell. Biochem. 2011) 2 3 64
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FAM43B Gene

Sources for FAM43B Gene

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