Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FAM41C Gene

Subcategory (RNA class) for FAM41C Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for FAM41C Gene

  • Family With Sequence Similarity 41, Member C 2 3

External Ids for FAM41C Gene

ORGUL Members for FAM41C Gene

Summaries for FAM41C Gene

GeneCards Summary for FAM41C Gene

FAM41C (Family With Sequence Similarity 41, Member C) is a RNA Gene, and belongs to lncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM41C Gene

Genomics for FAM41C Gene

Genomic Location for FAM41C Gene

Start:
868,071 bp from pter
End:
876,903 bp from pter
Size:
8,833 bases
Orientation:
Minus strand

Genomic View for FAM41C Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM41C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM41C Gene

Regulatory Elements for FAM41C Gene

Proteins for FAM41C Gene

Post-translational modifications for FAM41C Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM41C Gene

Domains for FAM41C Gene

Gene Families for FAM41C Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with FAM41C: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for FAM41C Gene

Function for FAM41C Gene

Phenotypes for FAM41C Gene

GenomeRNAi human phenotypes for FAM41C:
genes like me logo Genes that share phenotypes with FAM41C: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM41C Gene

Localization for FAM41C Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM41C Gene COMPARTMENTS Subcellular localization image for FAM41C gene
Compartment Confidence
extracellular 2
cytosol 1
mitochondrion 1
nucleus 1

No data available for Gene Ontology (GO) - Cellular Components for FAM41C Gene

Pathways for FAM41C Gene

SuperPathways for FAM41C Gene

No Data Available

Interacting Proteins for FAM41C Gene

Gene Ontology (GO) - Biological Process for FAM41C Gene

None

No data available for Pathways by source for FAM41C Gene

Transcripts for FAM41C Gene

mRNA/cDNA for FAM41C Gene

(2) Additional mRNA sequences :
(15) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM41C Gene

Family with sequence similarity 41, member C:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM41C Gene

No ASD Table

Relevant External Links for FAM41C Gene

GeneLoc Exon Structure for
FAM41C
ECgene alternative splicing isoforms for
FAM41C

Expression for FAM41C Gene

mRNA expression in normal human tissues for FAM41C Gene

SOURCE GeneReport for Unigene cluster for FAM41C Gene Hs.449006

genes like me logo Genes that share expressions with FAM41C: view

Orthologs for FAM41C Gene

Evolution for FAM41C Gene

ENSEMBL:
Gene Tree for FAM41C (if available)
TreeFam:
Gene Tree for FAM41C (if available)

No data available for Orthologs for FAM41C Gene

Paralogs for FAM41C Gene

No data available for Paralogs for FAM41C Gene

Variants for FAM41C Gene

Sequence variations from dbSNP and Humsavar for FAM41C Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs4246499 -- 878,260(+) ATGCC(A/G)GCCAC upstream-variant-2KB
rs4246500 -- 877,371(+) AGCAC(C/T)TGCTT upstream-variant-2KB
rs4268301 -- 878,767(+) GAGCA(C/G)TTAAG upstream-variant-2KB
rs4951932 -- 872,381(+) TTAGA(A/C)ACTTT intron-variant
rs4951933 -- 872,843(+) GGAGG(C/G)GGTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM41C Gene

Variant ID Type Subtype PubMed ID
dgv2n71 CNV Gain 21882294
dgv3e1 CNV Complex 17122850
dgv7e1 CNV Complex 17122850
essv4734 CNV CNV 17122850
nsv10161 CNV Gain+Loss 18304495
dgv1n67 CNV Gain 20364138
essv2408 CNV CNV 17122850
nsv517709 CNV Gain+Loss 19592680
nsv871252 CNV Gain 21882294
dgv7n71 CNV Gain 21882294
nsv442837 CNV CNV 18776908
nsv832980 CNV Gain 17160897
nsv508924 CNV Insertion 20534489
nsv428334 CNV Gain 18775914
esv991325 CNV Insertion 20482838

Relevant External Links for FAM41C Gene

HapMap Linkage Disequilibrium report
FAM41C

Disorders for FAM41C Gene

No disorders were found for FAM41C Gene.

No data available for UniProtKB/Swiss-Prot for FAM41C Gene

Publications for FAM41C Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3

Products for FAM41C Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate FAM41C
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FAM41C
    • Block miRNA regulation of FAM41C using miScript Target Protectors

    Sources for FAM41C Gene

    Back to Top

    Content