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Aliases for FAM3D Gene

Aliases for FAM3D Gene

  • Family With Sequence Similarity 3 Member D 2 3 5
  • Oncoprotein-Induced Transcript 1 2 3
  • Family With Sequence Similarity 3, Member D 2
  • Cytokine-Like Protein EF-7 3
  • Protein FAM3D 3
  • OIT1 3
  • EF7 3

External Ids for FAM3D Gene

Previous GeneCards Identifiers for FAM3D Gene

  • GC03M057483
  • GC03M057988
  • GC03M058474
  • GC03M058577
  • GC03M058594
  • GC03M058619

Summaries for FAM3D Gene

GeneCards Summary for FAM3D Gene

FAM3D (Family With Sequence Similarity 3 Member D) is a Protein Coding gene. Diseases associated with FAM3D include Narcolepsy. Gene Ontology (GO) annotations related to this gene include cytokine activity. An important paralog of this gene is FAM3A.

Additional gene information for FAM3D Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM3D Gene

Genomics for FAM3D Gene

GeneHancer (GH) Regulatory Elements for FAM3D Gene

Promoters and enhancers for FAM3D Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I058666 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE dbSUPER 557.4 -0.9 -944 3.1 NRF1 GABPA FAM3D LOC105377109 GC03P058659 C3orf67-AS1
GH03I058657 Promoter/Enhancer 0.9 EPDnew ENCODE dbSUPER 550.4 +9.0 8984 0.8 GC03P058659 FAM3D GC03M058625
GH03I058664 Enhancer 0.3 dbSUPER 557.5 +1.7 1743 1.5 ZMYM3 FAM3D LOC105377109 GC03P058659
GH03I058560 Enhancer 0.9 Ensembl ENCODE 9.6 +105.2 105186 2.1 SOX5 SOX13 CTCF TEAD1 JUN ZNF384 RAD21 ETS1 RFX5 TEAD3 ACOX2 FAM3D-AS1 FAM107A RPP14 HTD2 FAM3D ENSG00000243384
GH03I058693 Enhancer 0.7 ENCODE dbSUPER 11.8 -27.3 -27322 0.6 ZNF687 NR2F1 IKZF1 ELF1 DPF2 RUNX3 SPI1 FAM3D C3orf67-AS1 FAM107A PXK LOC105377109 GC03P058659
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FAM3D on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the FAM3D gene promoter:

Genomic Locations for FAM3D Gene

Genomic Locations for FAM3D Gene
chr3:58,633,943-58,666,848
(GRCh38/hg38)
Size:
32,906 bases
Orientation:
Minus strand
chr3:58,619,670-58,652,575
(GRCh37/hg19)

Genomic View for FAM3D Gene

Genes around FAM3D on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM3D Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM3D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM3D Gene

Proteins for FAM3D Gene

  • Protein details for FAM3D Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96BQ1-FAM3D_HUMAN
    Recommended name:
    Protein FAM3D
    Protein Accession:
    Q96BQ1
    Secondary Accessions:
    • Q547G2

    Protein attributes for FAM3D Gene

    Size:
    224 amino acids
    Molecular mass:
    24963 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM3D Gene

Post-translational modifications for FAM3D Gene

Antibody Products

  • Abcam antibodies for FAM3D
  • Cloud-Clone Corp. Antibodies for FAM3D

No data available for DME Specific Peptides for FAM3D Gene

Domains & Families for FAM3D Gene

Gene Families for FAM3D Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Predicted membrane proteins

Protein Domains for FAM3D Gene

ProtoNet:

Suggested Antigen Peptide Sequences for FAM3D Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96BQ1

UniProtKB/Swiss-Prot:

FAM3D_HUMAN :
  • Belongs to the FAM3 family.
Family:
  • Belongs to the FAM3 family.
genes like me logo Genes that share domains with FAM3D: view

Function for FAM3D Gene

Phenotypes From GWAS Catalog for FAM3D Gene

Gene Ontology (GO) - Molecular Function for FAM3D Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005125 cytokine activity NAS 12160727
genes like me logo Genes that share ontologies with FAM3D: view
genes like me logo Genes that share phenotypes with FAM3D: view

Animal Models for FAM3D Gene

MGI Knock Outs for FAM3D:

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for FAM3D Gene

Localization for FAM3D Gene

Subcellular locations from UniProtKB/Swiss-Prot for FAM3D Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FAM3D gene
Compartment Confidence
extracellular 5
cytosol 2
plasma membrane 1
mitochondrion 1
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for FAM3D Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region NAS 12160727
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with FAM3D: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for FAM3D Gene

Pathways & Interactions for FAM3D Gene

SuperPathways for FAM3D Gene

No Data Available

Interacting Proteins for FAM3D Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000351632%0d%0a9606.ENSP00000237596%0d%0a
Selected Interacting proteins: Q96BQ1-FAM3D_HUMAN ENSP00000351632 for FAM3D Gene via IID STRING

Gene Ontology (GO) - Biological Process for FAM3D Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0010469 regulation of receptor activity IEA --
GO:0046676 negative regulation of insulin secretion IDA 12160727
genes like me logo Genes that share ontologies with FAM3D: view

No data available for Pathways by source and SIGNOR curated interactions for FAM3D Gene

Drugs & Compounds for FAM3D Gene

No Compound Related Data Available

Transcripts for FAM3D Gene

Unigene Clusters for FAM3D Gene

Family with sequence similarity 3, member D:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM3D Gene

No ASD Table

Relevant External Links for FAM3D Gene

GeneLoc Exon Structure for
FAM3D
ECgene alternative splicing isoforms for
FAM3D

Expression for FAM3D Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM3D Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for FAM3D Gene

This gene is overexpressed in Colon - Transverse (x18.2), Esophagus - Mucosa (x13.1), and Minor Salivary Gland (x9.6).

Protein differential expression in normal tissues from HIPED for FAM3D Gene

This gene is overexpressed in Nasal epithelium (47.3) and Lavage (8.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FAM3D Gene



NURSA nuclear receptor signaling pathways regulating expression of FAM3D Gene:

FAM3D

SOURCE GeneReport for Unigene cluster for FAM3D Gene:

Hs.61265

mRNA Expression by UniProt/SwissProt for FAM3D Gene:

Q96BQ1-FAM3D_HUMAN
Tissue specificity: Abundantly expressed in placenta and weakly expressed in small intestine.

Evidence on tissue expression from TISSUES for FAM3D Gene

  • Intestine(4.7)
  • Saliva(4)
  • Stomach(2.4)
genes like me logo Genes that share expression patterns with FAM3D: view

Primer Products

No data available for Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM3D Gene

Orthologs for FAM3D Gene

This gene was present in the common ancestor of animals.

Orthologs for FAM3D Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM3D 33 34
  • 99.4 (n)
dog
(Canis familiaris)
Mammalia FAM3D 33 34
  • 83.63 (n)
cow
(Bos Taurus)
Mammalia FAM3D 33 34
  • 81.68 (n)
mouse
(Mus musculus)
Mammalia Oit1 33 16 34
  • 77.98 (n)
rat
(Rattus norvegicus)
Mammalia Fam3d 33
  • 77.26 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia FAM3D 34
  • 68 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia FAM3D 34
  • 58 (a)
OneToOne
chicken
(Gallus gallus)
Aves FAM3D 33 34
  • 63.76 (n)
lizard
(Anolis carolinensis)
Reptilia FAM3D 34
  • 59 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia fam3d 33
  • 60.96 (n)
Str.10335 33
zebrafish
(Danio rerio)
Actinopterygii zgc:101783 34
  • 36 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea M70.4 34
  • 8 (a)
ManyToMany
Y73B3A.3 34
  • 8 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.67 34
  • 32 (a)
OneToMany
Species where no ortholog for FAM3D was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for FAM3D Gene

ENSEMBL:
Gene Tree for FAM3D (if available)
TreeFam:
Gene Tree for FAM3D (if available)

Paralogs for FAM3D Gene

Paralogs for FAM3D Gene

(3) SIMAP similar genes for FAM3D Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with FAM3D: view

Variants for FAM3D Gene

Sequence variations from dbSNP and Humsavar for FAM3D Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000031450 -- 58,651,023(-) T/G intron_variant
rs1000034674 -- 58,642,601(-) C/A intron_variant
rs1000097837 -- 58,634,774(-) G/A intron_variant
rs1000284070 -- 58,656,886(-) G/A intron_variant
rs1000343914 -- 58,663,077(-) T/G genic_upstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for FAM3D Gene

Variant ID Type Subtype PubMed ID
dgv4749n100 CNV gain 25217958
esv28465 CNV gain 19812545
esv3449945 CNV duplication 20981092
esv3596253 CNV gain 21293372
esv3893702 CNV loss 25118596
nsv460560 CNV loss 19166990
nsv590379 CNV loss 21841781

Variation tolerance for FAM3D Gene

Residual Variation Intolerance Score: 45.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.15; 23.29% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for FAM3D Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM3D

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM3D Gene

Disorders for FAM3D Gene

MalaCards: The human disease database

(1) MalaCards diseases for FAM3D Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
narcolepsy
  • narcolepsy, without cataplexy
- elite association - COSMIC cancer census association via MalaCards
Search FAM3D in MalaCards View complete list of genes associated with diseases

Additional Disease Information for FAM3D

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with FAM3D: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FAM3D Gene

Publications for FAM3D Gene

  1. Cloning, expression, and initial characterization of a novel cytokine-like gene family. (PMID: 12160727) Zhu Y … Young PR (Genomics 2002) 2 3 4 22 58
  2. Identification of FAM3D as a new endogenous chemotaxis agonist for the formyl peptide receptors. (PMID: 26966188) Peng X … Wang Y (Journal of cell science 2016) 2 3 58
  3. An approach based on a genome-wide association study reveals candidate loci for narcolepsy. (PMID: 20677014) Shimada M … Tokunaga K (Human genetics 2010) 3 44 58
  4. Identification of N-linked glycoproteins in human saliva by glycoprotein capture and mass spectrometry. (PMID: 16740002) Ramachandran P … Loo JA (Journal of proteome research 2006) 3 4 58
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58

Products for FAM3D Gene

Sources for FAM3D Gene

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