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Aliases for FAM27L Gene

Subcategory (RNA class) for FAM27L Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for FAM27L Gene

  • Family With Sequence Similarity 27-Like 2 3

External Ids for FAM27L Gene

ORGUL Members for FAM27L Gene

Summaries for FAM27L Gene

GeneCards Summary for FAM27L Gene

FAM27L (Family With Sequence Similarity 27-Like) is an RNA Gene, and belongs to the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM27L Gene

Genomics for FAM27L Gene

Genomic Location for FAM27L Gene

Start:
22,298,691 bp from pter
End:
22,299,893 bp from pter
Size:
1,203 bases
Orientation:
Plus strand

Genomic View for FAM27L Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM27L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM27L Gene

Regulatory Elements for FAM27L Gene

Proteins for FAM27L Gene

  • Protein details for FAM27L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N5T8-FA27L_HUMAN
    Recommended name:
    Protein FAM27L
    Protein Accession:
    Q8N5T8
    Secondary Accessions:

    Protein attributes for FAM27L Gene

    Size:
    71 amino acids
    Molecular mass:
    8147 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM27L Gene

Proteomics data for FAM27L Gene at MOPED

Post-translational modifications for FAM27L Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM27L Gene

Domains for FAM27L Gene

Protein Domains for FAM27L Gene

ProtoNet:

Suggested Antigen Peptide Sequences for FAM27L Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8N5T8

UniProtKB/Swiss-Prot:

FA27L_HUMAN
Family:
  • Belongs to the FAM27 family.:
    • Q8N5T8
genes like me logo Genes that share domains with FAM27L: view

No data available for Gene Families for FAM27L Gene

Function for FAM27L Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM27L Gene

Localization for FAM27L Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM27L Gene COMPARTMENTS Subcellular localization image for FAM27L gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM27L Gene

Pathways for FAM27L Gene

SuperPathways for FAM27L Gene

No Data Available

Interacting Proteins for FAM27L Gene

Gene Ontology (GO) - Biological Process for FAM27L Gene

None

No data available for Pathways by source for FAM27L Gene

Transcripts for FAM27L Gene

mRNA/cDNA for FAM27L Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM27L Gene

Family with sequence similarity 27-like:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM27L Gene

No ASD Table

Relevant External Links for FAM27L Gene

GeneLoc Exon Structure for
FAM27L
ECgene alternative splicing isoforms for
FAM27L

Expression for FAM27L Gene

mRNA expression in normal human tissues for FAM27L Gene

mRNA differential expression in normal tissues according to GTEx for FAM27L Gene

This gene is overexpressed in Testis (45.9) and Cervix - Endocervix (7.1).

SOURCE GeneReport for Unigene cluster for FAM27L Gene Hs.348578

genes like me logo Genes that share expressions with FAM27L: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for FAM27L Gene

Orthologs for FAM27L Gene

Evolution for FAM27L Gene

ENSEMBL:
Gene Tree for FAM27L (if available)
TreeFam:
Gene Tree for FAM27L (if available)

No data available for Orthologs for FAM27L Gene

Paralogs for FAM27L Gene

No data available for Paralogs for FAM27L Gene

Variants for FAM27L Gene

Sequence variations from dbSNP and Humsavar for FAM27L Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs7224984 -- 22,300,390(+) cgccc(C/T)gtccc downstream-variant-500B
rs9912194 -- 22,299,099(+) CTGCC(A/G)GCTGA intron-variant
rs9989450 -- 22,299,650(+) AAGCC(A/G)GGAAT nc-transcript-variant
rs9989453 -- 22,299,387(+) TCCTG(G/T)CGGTT intron-variant
rs9989454 -- 22,299,432(+) GGAGA(C/T)GCGTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM27L Gene

Variant ID Type Subtype PubMed ID
dgv937e1 CNV Complex 17122850
esv2660756 CNV Deletion 23128226
esv2751621 CNV Gain 17911159
dgv3113n71 CNV Gain 21882294
dgv3114n71 CNV Gain 21882294
nsv516664 CNV Gain+Loss 19592680
nsv470584 CNV Gain 18288195
dgv539e199 CNV Deletion 23128226
dgv3116n71 CNV Loss 21882294
dgv3117n71 CNV Gain 21882294
dgv3118n71 CNV Gain 21882294
dgv3119n71 CNV Gain 21882294
dgv3120n71 CNV Gain 21882294
dgv3121n71 CNV Gain 21882294
essv4843 CNV CNV 17122850
essv886 CNV CNV 17122850
nsv833402 CNV Loss 17160897
dgv364n27 CNV Gain 19166990
esv2751622 CNV Gain 17911159
dgv3122n71 CNV Gain 21882294
nsv907970 CNV Gain+Loss 21882294
nsv457715 CNV Loss 19166990
dgv3123n71 CNV Gain 21882294
dgv3124n71 CNV Gain 21882294
nsv833404 CNV Loss 17160897
nsv833405 CNV Gain+Loss 17160897
dgv938e1 CNV Complex 17122850
nsv428339 CNV Gain 18775914
dgv939e1 CNV Complex 17122850
nsv9523 CNV Gain 18304495

Relevant External Links for FAM27L Gene

HapMap Linkage Disequilibrium report
FAM27L
Human Gene Mutation Database (HGMD)
FAM27L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM27L Gene

Disorders for FAM27L Gene

No disorders were found for FAM27L Gene.

No data available for UniProtKB/Swiss-Prot for FAM27L Gene

Publications for FAM27L Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. A genome-wide association study identifies novel loci associated with susceptibility to chronic myeloid leukemia. (PMID: 21540461) Kim D.H. … Lipton J.H. (Blood 2011) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for FAM27L Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate FAM27L
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FAM27L
    • Block miRNA regulation of FAM27L using miScript Target Protectors

    Sources for FAM27L Gene

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