Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FAM27E5 Gene

Subcategory (RNA class) for FAM27E5 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM27E5 Gene

  • Family With Sequence Similarity E5 2 3 5
  • Family With Sequence Similarity 27-Like 2 3
  • FAM27L 3

External Ids for FAM27E5 Gene

Previous HGNC Symbols for FAM27E5 Gene

  • FAM27L

Previous GeneCards Identifiers for FAM27E5 Gene

  • GC17P022737
  • GC17P023068

Summaries for FAM27E5 Gene

GeneCards Summary for FAM27E5 Gene

FAM27E5 (Family With Sequence Similarity E5) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM27E5 Gene

Genomics for FAM27E5 Gene

Regulatory Elements for FAM27E5 Gene

Enhancers for FAM27E5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F022298 0.2 Ensembl 0.8 -0.2 -191 0.2 FAM27E5 LOC100421165
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM27E5 on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM27E5 Gene

Chromosome:
17
Start:
22,298,691 bp from pter
End:
22,299,893 bp from pter
Size:
1,203 bases
Orientation:
Plus strand

Genomic View for FAM27E5 Gene

Genes around FAM27E5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM27E5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM27E5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM27E5 Gene

Proteins for FAM27E5 Gene

Post-translational modifications for FAM27E5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM27E5 Gene

Domains & Families for FAM27E5 Gene

Suggested Antigen Peptide Sequences for FAM27E5 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for FAM27E5 Gene

Function for FAM27E5 Gene

genes like me logo Genes that share phenotypes with FAM27E5: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM27E5 Gene

Localization for FAM27E5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM27E5 Gene

Pathways & Interactions for FAM27E5 Gene

SuperPathways for FAM27E5 Gene

No Data Available

Interacting Proteins for FAM27E5 Gene

Gene Ontology (GO) - Biological Process for FAM27E5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM27E5 Gene

Transcripts for FAM27E5 Gene

mRNA/cDNA for FAM27E5 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM27E5 Gene

Family with sequence similarity 27-like:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM27E5 Gene

No ASD Table

Relevant External Links for FAM27E5 Gene

GeneLoc Exon Structure for
FAM27E5
ECgene alternative splicing isoforms for
FAM27E5

Expression for FAM27E5 Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM27E5 Gene:

FAM27E5

SOURCE GeneReport for Unigene cluster for FAM27E5 Gene:

Hs.348578
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FAM27E5 Gene

Orthologs for FAM27E5 Gene

Evolution for FAM27E5 Gene

ENSEMBL:
Gene Tree for FAM27E5 (if available)
TreeFam:
Gene Tree for FAM27E5 (if available)

No data available for Orthologs for FAM27E5 Gene

Paralogs for FAM27E5 Gene

No data available for Paralogs for FAM27E5 Gene

Variants for FAM27E5 Gene

Sequence variations from dbSNP and Humsavar for FAM27E5 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs111814586 -- 22,300,030(+) ATGGG(G/T)AGTGG downstream-variant-500B
rs112966645 -- 22,299,054(+) GTGTC(A/G)TTCGC intron-variant
rs115288770 -- 22,300,271(+) GCCTG(A/G)ACACC downstream-variant-500B
rs116150167 -- 22,299,735(+) CGTGG(C/T)GGTGG nc-transcript-variant
rs116638746 -- 22,299,276(+) TGGAC(A/G)AATGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM27E5 Gene

Variant ID Type Subtype PubMed ID
nsv978398 CNV duplication 23825009
nsv9523 CNV gain 18304495
nsv833405 CNV gain+loss 17160897
nsv833404 CNV loss 17160897
nsv833402 CNV loss 17160897
nsv574613 CNV loss 21841781
nsv574612 CNV gain+loss 21841781
nsv574610 CNV gain 21841781
nsv516664 CNV gain+loss 19592680
nsv470584 CNV gain 18288195
nsv457715 CNV loss 19166990
nsv428339 CNV gain 18775914
nsv1065504 CNV gain 25217958
nsv1059146 CNV gain 25217958
esv3892985 CNV gain 25118596
esv3640252 CNV loss 21293372
esv3572520 CNV gain 25503493
esv2758681 CNV gain+loss 17122850
esv2751622 CNV gain 17911159
esv2751621 CNV gain 17911159
esv2660756 CNV deletion 23128226
dgv567e214 CNV gain 21293372
dgv539e199 CNV deletion 23128226
dgv364n27 CNV gain 19166990
dgv3132n100 CNV gain 25217958
dgv3131n100 CNV gain 25217958
dgv3130n100 CNV gain 25217958
dgv3128n100 CNV gain 25217958
dgv126n111 CNV deletion 26073780

Relevant External Links for FAM27E5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM27E5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM27E5 Gene

Disorders for FAM27E5 Gene

Relevant External Links for FAM27E5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM27E5
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM27E5

No disorders were found for FAM27E5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM27E5 Gene

Publications for FAM27E5 Gene

  1. A genome-wide association study identifies novel loci associated with susceptibility to chronic myeloid leukemia. (PMID: 21540461) Kim D.H. … Lipton J.H. (Blood 2011) 3 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FAM27E5 Gene

Sources for FAM27E5 Gene

Content
Loading form....