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Aliases for FAM27E3 Gene

Subcategory (RNA class) for FAM27E3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM27E3 Gene

  • Family With Sequence Similarity 27, Member E3 2 3

External Ids for FAM27E3 Gene

Previous GeneCards Identifiers for FAM27E3 Gene

  • GC09U900765
  • GC09M067375
  • GC09M046277

Summaries for FAM27E3 Gene

GeneCards Summary for FAM27E3 Gene

FAM27E3 (Family With Sequence Similarity 27, Member E3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM27E3 Gene

Genomics for FAM27E3 Gene

Regulatory Elements for FAM27E3 Gene

Genomic Location for FAM27E3 Gene

Start:
67,717,411 bp from pter
End:
67,719,179 bp from pter
Size:
1,769 bases
Orientation:
Minus strand

Genomic View for FAM27E3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM27E3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM27E3 Gene

Proteins for FAM27E3 Gene

  • Protein details for FAM27E3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q08E93-F27E3_HUMAN
    Recommended name:
    Protein FAM27E3
    Protein Accession:
    Q08E93
    Secondary Accessions:

    Protein attributes for FAM27E3 Gene

    Size:
    113 amino acids
    Molecular mass:
    13507 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM27E3 Gene

Proteomics data for FAM27E3 Gene at MOPED

Post-translational modifications for FAM27E3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FAM27E3 Gene

Domains for FAM27E3 Gene

Protein Domains for FAM27E3 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for FAM27E3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q08E93

UniProtKB/Swiss-Prot:

F27E3_HUMAN :
  • Q08E93
Family:
  • Belongs to the FAM27 family.
genes like me logo Genes that share domains with FAM27E3: view

No data available for Gene Families for FAM27E3 Gene

Function for FAM27E3 Gene

Gene Ontology (GO) - Molecular Function for FAM27E3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with FAM27E3: view

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FAM27E3

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM27E3 Gene

Localization for FAM27E3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM27E3 Gene

Pathways for FAM27E3 Gene

SuperPathways for FAM27E3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM27E3 Gene

None

No data available for Pathways by source for FAM27E3 Gene

Transcripts for FAM27E3 Gene

mRNA/cDNA for FAM27E3 Gene

(6) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM27E3 Gene

Family with sequence similarity 27, member E3:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FAM27E3

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM27E3 Gene

No ASD Table

Relevant External Links for FAM27E3 Gene

GeneLoc Exon Structure for
FAM27E3
ECgene alternative splicing isoforms for
FAM27E3

Expression for FAM27E3 Gene

mRNA expression in normal human tissues for FAM27E3 Gene

SOURCE GeneReport for Unigene cluster for FAM27E3 Gene Hs.31240

genes like me logo Genes that share expressions with FAM27E3: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for FAM27E3 Gene

Orthologs for FAM27E3 Gene

Evolution for FAM27E3 Gene

ENSEMBL:
Gene Tree for FAM27E3 (if available)
TreeFam:
Gene Tree for FAM27E3 (if available)

No data available for Orthologs for FAM27E3 Gene

Paralogs for FAM27E3 Gene

Selected SIMAP similar genes for FAM27E3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM27E3: view

No data available for Paralogs for FAM27E3 Gene

Variants for FAM27E3 Gene

Sequence variations from dbSNP and Humsavar for FAM27E3 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs1656261 -- 67,718,655(+) CATGG(C/T)GGCCT nc-transcript-variant
rs1740987 -- 67,719,955(-) ccgcg(C/T)tttac upstream-variant-2KB
rs4961943 -- 67,720,650(+) AGGCC(A/G)ACTAC upstream-variant-2KB
rs28494932 -- 67,718,765(+) GCCCA(C/G)GTGAG nc-transcript-variant
rs62538668 -- 67,720,538(-) TTCTT(C/T)GCCAA upstream-variant-2KB

Relevant External Links for FAM27E3 Gene

HapMap Linkage Disequilibrium report
FAM27E3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for FAM27E3 Gene

Disorders for FAM27E3 Gene

No disorders were found for FAM27E3 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for FAM27E3 Gene

Publications for FAM27E3 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual J.F. … Vidal M. (Nature 2005) 3
  4. Protein microarray analysis identifies human cellular prion protein interactors. (PMID: 18482256) Satoh J. … Tabunoki H. (Neuropathol. Appl. Neurobiol. 2009) 3
  5. A quantitative chaperone interaction network reveals the architecture of cellular protein homeostasis pathways. (PMID: 25036637) Taipale M. … Lindquist S. (Cell 2014) 3

Products for FAM27E3 Gene

Sources for FAM27E3 Gene

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