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Aliases for FAM27C Gene

Subcategory (RNA class) for FAM27C Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM27C Gene

  • Family With Sequence Similarity 27, Member C 2 3
  • FAM27A1 3 4
  • FAM27A3 3 4
  • Family With Sequence Similarity 27, Member A 3
  • FAM27A FAM27B FAM27C 4
  • FAM27A2 4
  • FAM27A 3

External Ids for FAM27C Gene

Previous GeneCards Identifiers for FAM27C Gene

  • GC00U921574
  • GC09U900684
  • GC09P044931
  • GC09P044990

Summaries for FAM27C Gene

GeneCards Summary for FAM27C Gene

FAM27C (Family With Sequence Similarity 27, Member C) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM27C Gene

Genomics for FAM27C Gene

Genomic Location for FAM27C Gene

Start:
61,854,084 bp from pter
End:
61,855,340 bp from pter
Size:
1,257 bases
Orientation:
Plus strand

Genomic View for FAM27C Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM27C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM27C Gene

No data available for Regulatory Elements for FAM27C Gene

Proteins for FAM27C Gene

  • Protein details for FAM27C Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5VT28-FAM27_HUMAN
    Recommended name:
    Protein FAM27A/B/C
    Protein Accession:
    Q5VT28
    Secondary Accessions:

    Protein attributes for FAM27C Gene

    Size:
    67 amino acids
    Molecular mass:
    7388 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM27C Gene

Proteomics data for FAM27C Gene at MOPED

Post-translational modifications for FAM27C Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM27C Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for FAM27C Gene

Domains for FAM27C Gene

Protein Domains for FAM27C Gene

ProtoNet:

Suggested Antigen Peptide Sequences for FAM27C Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5VT28

UniProtKB/Swiss-Prot:

FAM27_HUMAN :
  • Q5VT28
Family:
  • Belongs to the FAM27 family.
genes like me logo Genes that share domains with FAM27C: view

No data available for Gene Families for FAM27C Gene

Function for FAM27C Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM27C Gene

Localization for FAM27C Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM27C Gene COMPARTMENTS Subcellular localization image for FAM27C gene
Compartment Confidence
nucleus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM27C Gene

Pathways for FAM27C Gene

SuperPathways for FAM27C Gene

No Data Available

Interacting Proteins for FAM27C Gene

Gene Ontology (GO) - Biological Process for FAM27C Gene

None

No data available for Pathways by source for FAM27C Gene

Transcripts for FAM27C Gene

mRNA/cDNA for FAM27C Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM27C Gene

Family with sequence similarity 27, member C:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FAM27C

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM27C Gene

No ASD Table

Relevant External Links for FAM27C Gene

GeneLoc Exon Structure for
FAM27C
ECgene alternative splicing isoforms for
FAM27C

Expression for FAM27C Gene

mRNA expression in normal human tissues for FAM27C Gene

SOURCE GeneReport for Unigene cluster for FAM27C Gene Hs.645763

genes like me logo Genes that share expressions with FAM27C: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for FAM27C Gene

Orthologs for FAM27C Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for FAM27C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 82 (a)
OneToMany
Species with no ortholog for FAM27C:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FAM27C Gene

ENSEMBL:
Gene Tree for FAM27C (if available)
TreeFam:
Gene Tree for FAM27C (if available)

Paralogs for FAM27C Gene

Selected SIMAP similar genes for FAM27C Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM27C: view

No data available for Paralogs for FAM27C Gene

Variants for FAM27C Gene

Sequence variations from dbSNP and Humsavar for FAM27C Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs2803686 -- 61,854,316(-) GTCCC(A/C)GCCTG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM27C Gene

Variant ID Type Subtype PubMed ID
nsv8483 CNV Gain 18304495
dgv8215n71 CNV Gain 21882294
esv2738449 CNV Deletion 23290073
dgv8216n71 CNV Loss 21882294
nsv893299 CNV Loss 21882294
nsv893300 CNV Gain 21882294
dgv8217n71 CNV Gain 21882294
dgv2350e1 CNV Complex 17122850
esv21770 CNV Gain+Loss 19812545
nsv8471 CNV Gain 18304495

Relevant External Links for FAM27C Gene

HapMap Linkage Disequilibrium report
FAM27C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM27C Gene

Disorders for FAM27C Gene

No disorders were found for FAM27C Gene.

No data available for UniProtKB/Swiss-Prot for FAM27C Gene

Publications for FAM27C Gene

  1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for FAM27C Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate FAM27C
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FAM27C
    • Block miRNA regulation of FAM27C using miScript Target Protectors

    Sources for FAM27C Gene

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