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Aliases for FAM27B Gene

Subcategory (RNA class) for FAM27B Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM27B Gene

  • Family With Sequence Similarity 27, Member B 2 3
  • FAM27A2 3 4
  • FAM27A FAM27B FAM27C 4
  • FAM27A1 4
  • FAM27A3 4

External Ids for FAM27B Gene

Previous GeneCards Identifiers for FAM27B Gene

  • GC00U921573
  • GC09U900686
  • GC09M067383

Summaries for FAM27B Gene

GeneCards Summary for FAM27B Gene

FAM27B (Family With Sequence Similarity 27, Member B) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM27B Gene

Genomics for FAM27B Gene

Regulatory Elements for FAM27B Gene

Transcription factor binding sites by QIAGEN in the FAM27B gene promoter:

Genomic Location for FAM27B Gene

Start:
67,725,483 bp from pter
End:
67,726,743 bp from pter
Size:
1,261 bases
Orientation:
Minus strand

Genomic View for FAM27B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM27B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM27B Gene

Proteins for FAM27B Gene

  • Protein details for FAM27B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5VT28-FAM27_HUMAN
    Recommended name:
    Protein FAM27A/B/C
    Protein Accession:
    Q5VT28
    Secondary Accessions:

    Protein attributes for FAM27B Gene

    Size:
    67 amino acids
    Molecular mass:
    7388 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM27B Gene

Proteomics data for FAM27B Gene at MOPED

Post-translational modifications for FAM27B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FAM27B Gene

Domains for FAM27B Gene

Protein Domains for FAM27B Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q5VT28

UniProtKB/Swiss-Prot:

FAM27_HUMAN :
  • Q5VT28
Family:
  • Belongs to the FAM27 family.
genes like me logo Genes that share domains with FAM27B: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for FAM27B Gene

Function for FAM27B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM27B Gene

Localization for FAM27B Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM27B Gene COMPARTMENTS Subcellular localization image for FAM27B gene
Compartment Confidence
extracellular 3
nucleus 2
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM27B Gene

Pathways for FAM27B Gene

SuperPathways for FAM27B Gene

No Data Available

Interacting Proteins for FAM27B Gene

Gene Ontology (GO) - Biological Process for FAM27B Gene

None

No data available for Pathways by source for FAM27B Gene

Transcripts for FAM27B Gene

mRNA/cDNA for FAM27B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FAM27B

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM27B Gene

No ASD Table

Relevant External Links for FAM27B Gene

GeneLoc Exon Structure for
FAM27B
ECgene alternative splicing isoforms for
FAM27B

Expression for FAM27B Gene

mRNA expression in normal human tissues for FAM27B Gene

mRNA differential expression in normal tissues according to GTEx for FAM27B Gene

This gene is overexpressed in Testis (4.3).
genes like me logo Genes that share expressions with FAM27B: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for FAM27B Gene

Orthologs for FAM27B Gene

Evolution for FAM27B Gene

ENSEMBL:
Gene Tree for FAM27B (if available)
TreeFam:
Gene Tree for FAM27B (if available)

No data available for Orthologs for FAM27B Gene

Paralogs for FAM27B Gene

Selected SIMAP similar genes for FAM27B Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM27B: view

No data available for Paralogs for FAM27B Gene

Variants for FAM27B Gene

Sequence variations from dbSNP and Humsavar for FAM27B Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs2749825 -- 67,726,226(-) tgtgt(C/G)tctgt intron-variant
rs2983380 -- 67,726,295(-) cctct(G/T)ctgta intron-variant
rs62543666 -- 67,726,206(+) AGAGA(A/C)TGGGA intron-variant
rs62543667 -- 67,726,241(+) CACAC(A/T)CACAC intron-variant
rs62543668 -- 67,726,270(+) ACACA(C/G)AGACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM27B Gene

Variant ID Type Subtype PubMed ID
dgv133n16 OTHER Inversion 17901297
nsv893356 CNV Gain 21882294
esv1000243 CNV Deletion 20482838
esv2738489 CNV Deletion 23290073
nsv893386 CNV Gain 21882294
essv996 CNV CNV 17122850
esv28687 CNV Gain+Loss 19812545
esv992391 CNV Gain 20482838
dgv2375e1 CNV Complex 17122850
nsv428217 CNV Gain 18775914
dgv2376e1 CNV Complex 17122850
essv22590 CNV CNV 17122850
dgv2377e1 CNV Complex 17122850
nsv8503 CNV Gain 18304495
nsv831599 CNV Loss 17160897
nsv8504 CNV Gain+Loss 18304495

Relevant External Links for FAM27B Gene

HapMap Linkage Disequilibrium report
FAM27B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM27B Gene

Disorders for FAM27B Gene

No disorders were found for FAM27B Gene.

No data available for UniProtKB/Swiss-Prot for FAM27B Gene

Publications for FAM27B Gene

  1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4

Products for FAM27B Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate FAM27B
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FAM27B
    • Block miRNA regulation of FAM27B using miScript Target Protectors

    Sources for FAM27B Gene

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