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Aliases for FAM27B Gene

Subcategory (RNA class) for FAM27B Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM27B Gene

  • Family With Sequence Similarity 27 Member B 2 3 5
  • FAM27A2 3 4
  • Family With Sequence Similarity 27, Member B 2
  • FAM27B FAM27C 4
  • FAM27A1 4
  • FAM27A3 4
  • FAM27A 4

External Ids for FAM27B Gene

Previous GeneCards Identifiers for FAM27B Gene

  • GC00U921573
  • GC09U900686
  • GC09M067383

Summaries for FAM27B Gene

GeneCards Summary for FAM27B Gene

FAM27B (Family With Sequence Similarity 27 Member B) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM27B Gene

Genomics for FAM27B Gene

Regulatory Elements for FAM27B Gene


Promoters for FAM27B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001909174 1843 5000 MAZ RFX1 STAT1 ZBTB2 L3MBTL2 NRF1 FEZF1 ZIC2 POLR2A ZNF692

Transcription factor binding sites by QIAGEN in the FAM27B gene promoter:

Genomic Location for FAM27B Gene

Chromosome:
9
Start:
67,725,483 bp from pter
End:
67,726,743 bp from pter
Size:
1,261 bases
Orientation:
Minus strand

Genomic View for FAM27B Gene

Genes around FAM27B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM27B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM27B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM27B Gene

Proteins for FAM27B Gene

  • Protein details for FAM27B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5VT28-FAM27_HUMAN
    Recommended name:
    Protein FAM27A/B/C
    Protein Accession:
    Q5VT28

    Protein attributes for FAM27B Gene

    Size:
    67 amino acids
    Molecular mass:
    7388 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM27B Gene

Post-translational modifications for FAM27B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FAM27B Gene

Domains & Families for FAM27B Gene

Protein Domains for FAM27B Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q5VT28

UniProtKB/Swiss-Prot:

FAM27_HUMAN :
  • Belongs to the FAM27 family.
Family:
  • Belongs to the FAM27 family.
genes like me logo Genes that share domains with FAM27B: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for FAM27B Gene

Function for FAM27B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM27B Gene

Localization for FAM27B Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM27B Gene COMPARTMENTS Subcellular localization image for FAM27B gene
Compartment Confidence
extracellular 3
nucleus 2
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM27B Gene

Pathways & Interactions for FAM27B Gene

SuperPathways for FAM27B Gene

No Data Available

Interacting Proteins for FAM27B Gene

Gene Ontology (GO) - Biological Process for FAM27B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM27B Gene

Transcripts for FAM27B Gene

mRNA/cDNA for FAM27B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM27B Gene

No ASD Table

Relevant External Links for FAM27B Gene

GeneLoc Exon Structure for
FAM27B
ECgene alternative splicing isoforms for
FAM27B

Expression for FAM27B Gene

mRNA expression in normal human tissues for FAM27B Gene

mRNA differential expression in normal tissues according to GTEx for FAM27B Gene

This gene is overexpressed in Testis (x4.3).

NURSA nuclear receptor signaling pathways regulating expression of FAM27B Gene:

FAM27B
genes like me logo Genes that share expression patterns with FAM27B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FAM27B Gene

Orthologs for FAM27B Gene

Evolution for FAM27B Gene

ENSEMBL:
Gene Tree for FAM27B (if available)
TreeFam:
Gene Tree for FAM27B (if available)

No data available for Orthologs for FAM27B Gene

Paralogs for FAM27B Gene

(1) SIMAP similar genes for FAM27B Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM27B: view

No data available for Paralogs for FAM27B Gene

Variants for FAM27B Gene

Sequence variations from dbSNP and Humsavar for FAM27B Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs111589087 -- 67,726,681(+) CAACC(A/G/T)TGGGA nc-transcript-variant
rs111811930 -- 67,726,469(-) CCTGC(A/C)CGGAC nc-transcript-variant
rs111958978 -- 67,725,570(+) AGAAA(C/T)AGGGG nc-transcript-variant, upstream-variant-2KB
rs112034301 -- 67,726,317(+) ACACC(A/C)CCAGG intron-variant
rs112521878 -- 67,726,939(+) GACCT(C/G)CTTGA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FAM27B Gene

Variant ID Type Subtype PubMed ID
dgv1348e199 CNV deletion 23128226
esv2672729 CNV deletion 23128226
esv28583 CNV gain+loss 19812545
esv3348700 CNV duplication 20981092
nsv1077127 CNV deletion 25765185
nsv8471 CNV gain 18304495
nsv951169 CNV deletion 24416366
nsv968662 CNV duplication 23825009

Relevant External Links for FAM27B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM27B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM27B Gene

Disorders for FAM27B Gene

Relevant External Links for FAM27B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM27B

No disorders were found for FAM27B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM27B Gene

Publications for FAM27B Gene

  1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4 64

Products for FAM27B Gene

Sources for FAM27B Gene

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