Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FAM25BP Gene

Aliases for FAM25BP Gene

  • Family With Sequence Similarity 25 Member B, Pseudogene 2 5
  • FAM25B 3 4
  • Family With Sequence Similarity 25, Member B, Pseudogene 2
  • Family With Sequence Similarity 25, Member B 2
  • FAM25B Pseudogene 4
  • Protein FAM25B 3
  • Protein FAM25 3
  • FAM25A 3
  • FAM25C 3
  • FAM25G 3

External Ids for FAM25BP Gene

Previous HGNC Symbols for FAM25BP Gene

  • FAM25B

Summaries for FAM25BP Gene

GeneCards Summary for FAM25BP Gene

FAM25BP (Family With Sequence Similarity 25 Member B, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM25BP Gene

Genomics for FAM25BP Gene

Regulatory Elements for FAM25BP Gene

Enhancers for FAM25BP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F046366 0.4 Ensembl 0.8 -2.7 -2687 0.4 CTCF FAM25BP PIR45682
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM25BP on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM25BP Gene

Chromosome:
10
Start:
46,369,087 bp from pter
End:
46,373,563 bp from pter
Size:
4,477 bases
Orientation:
Plus strand

Genomic View for FAM25BP Gene

Genes around FAM25BP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM25BP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM25BP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM25BP Gene

Proteins for FAM25BP Gene

  • Protein details for FAM25BP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    B3EWG4-FM25B_HUMAN
    Recommended name:
    Putative protein FAM25BP
    Protein Accession:
    B3EWG4
    Secondary Accessions:
    • B2RV02
    • Q5VTM1

    Protein attributes for FAM25BP Gene

    Size:
    89 amino acids
    Molecular mass:
    9320 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAI12205.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

neXtProt entry for FAM25BP Gene

Post-translational modifications for FAM25BP Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM25BP Gene

Domains & Families for FAM25BP Gene

Protein Domains for FAM25BP Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

B3EWG4

UniProtKB/Swiss-Prot:

FM25B_HUMAN :
  • Belongs to the FAM25 family.
Family:
  • Belongs to the FAM25 family.
genes like me logo Genes that share domains with FAM25BP: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for FAM25BP Gene

Function for FAM25BP Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM25BP Gene

Localization for FAM25BP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM25BP Gene

Pathways & Interactions for FAM25BP Gene

SuperPathways for FAM25BP Gene

No Data Available

Interacting Proteins for FAM25BP Gene

Gene Ontology (GO) - Biological Process for FAM25BP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM25BP Gene

Transcripts for FAM25BP Gene

mRNA/cDNA for FAM25BP Gene

(1) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM25BP Gene

No ASD Table

Relevant External Links for FAM25BP Gene

GeneLoc Exon Structure for
FAM25BP
ECgene alternative splicing isoforms for
FAM25BP

Expression for FAM25BP Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM25BP Gene:

FAM25BP
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FAM25BP Gene

Orthologs for FAM25BP Gene

Evolution for FAM25BP Gene

ENSEMBL:
Gene Tree for FAM25BP (if available)
TreeFam:
Gene Tree for FAM25BP (if available)

No data available for Orthologs for FAM25BP Gene

Paralogs for FAM25BP Gene

No data available for Paralogs for FAM25BP Gene

Variants for FAM25BP Gene

Sequence variations from dbSNP and Humsavar for FAM25BP Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs111890401 -- 46,371,741(+) AGCGA(A/G)ACTCG intron-variant
rs112156396 -- 46,369,577(+) GGCAT(A/T)TTCAA intron-variant
rs112489770 -- 46,370,452(+) CTCAT(C/G)ATCCC intron-variant
rs11259801 -- 46,367,746(+) TAGGG(G/T)TACTG intron-variant, upstream-variant-2KB
rs11259802 -- 46,370,859(+) TCTCC(A/G)AATGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM25BP Gene

Variant ID Type Subtype PubMed ID
nsv982753 CNV duplication 23825009
nsv947949 CNV duplication 23825009
nsv831859 CNV gain+loss 17160897
nsv831853 CNV gain 17160897
nsv820817 CNV duplication 20802225
nsv550758 CNV loss 21841781
nsv437116 CNV loss 16327808
nsv1161950 CNV duplication 26073780
nsv1051404 CNV loss 25217958
nsv1050225 CNV gain+loss 25217958
nsv1041060 CNV gain+loss 25217958
nsv1037635 CNV gain 25217958
esv3891802 CNV gain 25118596
esv3891801 CNV gain+loss 25118596
esv2736152 CNV deletion 23290073
dgv837n100 CNV gain 25217958
dgv836n100 CNV gain+loss 25217958
dgv817n100 CNV loss 25217958
dgv807n100 CNV gain 25217958
dgv767n100 CNV gain 25217958
dgv765n100 CNV loss 25217958
dgv28e55 CNV gain 17911159
dgv135e199 CNV deletion 23128226
dgv1119n54 CNV loss 21841781
dgv1112n54 CNV gain+loss 21841781
dgv1110n54 CNV gain 21841781

Relevant External Links for FAM25BP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM25BP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM25BP Gene

Disorders for FAM25BP Gene

Relevant External Links for FAM25BP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM25BP

No disorders were found for FAM25BP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM25BP Gene

Publications for FAM25BP Gene

  1. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 3 4 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FAM25BP Gene

Sources for FAM25BP Gene

Content
Loading form....