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Aliases for FAM230C Gene

Subcategory (RNA class) for FAM230C Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for FAM230C Gene

  • Family With Sequence Similarity 230, Member C 2 3
  • Long Intergenic Non-Protein Coding RNA 281 2 3
  • Non-Protein Coding RNA 281 2
  • NCRNA00281 3
  • LINC00281 3

External Ids for FAM230C Gene

Previous Symbols for FAM230C Gene

  • NCRNA00281
  • LINC00281

Summaries for FAM230C Gene

GeneCards Summary for FAM230C Gene

FAM230C (Family With Sequence Similarity 230, Member C) is an RNA Gene, and belongs to the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM230C Gene

Genomics for FAM230C Gene

Genomic Location for FAM230C Gene

Start:
18,195,297 bp from pter
End:
18,232,024 bp from pter
Size:
36,728 bases
Orientation:
Plus strand

Genomic View for FAM230C Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM230C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM230C Gene

No data available for Regulatory Elements for FAM230C Gene

Proteins for FAM230C Gene

Post-translational modifications for FAM230C Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM230C Gene

Domains for FAM230C Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM230C Gene

Function for FAM230C Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM230C Gene

Localization for FAM230C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM230C Gene

Pathways for FAM230C Gene

SuperPathways for FAM230C Gene

No Data Available

Interacting Proteins for FAM230C Gene

Gene Ontology (GO) - Biological Process for FAM230C Gene

None

No data available for Pathways by source for FAM230C Gene

Transcripts for FAM230C Gene

mRNA/cDNA for FAM230C Gene

(3) Additional mRNA sequences :
(11) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM230C Gene

Family with sequence similarity 230, member C:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM230C Gene

No ASD Table

Relevant External Links for FAM230C Gene

GeneLoc Exon Structure for
FAM230C
ECgene alternative splicing isoforms for
FAM230C

Expression for FAM230C Gene

mRNA expression in normal human tissues for FAM230C Gene

mRNA expression in normal human tissues for FAM230C Gene

mRNA differential expression in normal tissues according to GTEx for FAM230C Gene

This gene is overexpressed in Testis (51.6).

SOURCE GeneReport for Unigene cluster for FAM230C Gene Hs.448583

genes like me logo Genes that share expressions with FAM230C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for FAM230C Gene

Orthologs for FAM230C Gene

Evolution for FAM230C Gene

ENSEMBL:
Gene Tree for FAM230C (if available)
TreeFam:
Gene Tree for FAM230C (if available)

No data available for Orthologs for FAM230C Gene

Paralogs for FAM230C Gene

No data available for Paralogs for FAM230C Gene

Variants for FAM230C Gene

Sequence variations from dbSNP and Humsavar for FAM230C Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type MAF
rs472302 -- 18,198,200(-) GGACC(G/T)CATCA intron-variant
rs476096 -- 18,200,544(-) ggaaa(C/T)acact intron-variant
rs477610 -- 18,194,741(-) GCAGG(C/G)AGGGA upstream-variant-2KB
rs477848 -- 18,200,379(-) ggaga(A/T)aatgt intron-variant
rs477879 -- 18,200,367(-) cccat(A/G)tatgc intron-variant

Relevant External Links for FAM230C Gene

HapMap Linkage Disequilibrium report
FAM230C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for FAM230C Gene

Disorders for FAM230C Gene

No disorders were found for FAM230C Gene.

No data available for UniProtKB/Swiss-Prot for FAM230C Gene

Publications for FAM230C Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for FAM230C Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate FAM230C
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FAM230C
    • Block miRNA regulation of FAM230C using miScript Target Protectors

    Sources for FAM230C Gene

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