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Aliases for FAM230B Gene

Subcategory (RNA class) for FAM230B Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM230B Gene

  • Family With Sequence Similarity 230 Member B (Non-Protein Coding) 2 3 5
  • Family With Sequence Similarity 230, Member B 2 3
  • Family With Sequence Similarity 230, Member B (Non-Protein Coding) 2
  • KB-1183D5.13 3

External Ids for FAM230B Gene

Previous GeneCards Identifiers for FAM230B Gene

  • GC22P021527

Summaries for FAM230B Gene

GeneCards Summary for FAM230B Gene

FAM230B (Family With Sequence Similarity 230 Member B (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAM230B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM230B Gene

Genomics for FAM230B Gene

Regulatory Elements for FAM230B Gene

Enhancers for FAM230B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22H020494 1.8 FANTOM5 ENCODE dbSUPER 10.7 -671.1 -671060 2 FEZF1 YBX1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 SP3 ZC3H11A MEF2D LZTR1 DGCR8 MED15 RPL7AP70 TRMT2A LOC100420177 RPL8P5 THAP7-AS1 THAP7 ENSG00000273343
GH22H021000 1.4 ENCODE dbSUPER 10.8 -164.8 -164820 4 HDGF PKNOX1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 THAP7-AS1 TUBA3GP LZTR1 ENSG00000234503 E2F6P3 POM121L8P BCRP6 ENSG00000236003 ENSG00000235578 RANBP1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM230B on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM230B Gene

Chromosome:
22
Start:
21,166,903 bp from pter
End:
21,192,156 bp from pter
Size:
25,254 bases
Orientation:
Plus strand

Genomic View for FAM230B Gene

Genes around FAM230B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM230B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM230B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM230B Gene

Proteins for FAM230B Gene

Post-translational modifications for FAM230B Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM230B Gene

Domains & Families for FAM230B Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM230B Gene

Function for FAM230B Gene

Phenotypes for FAM230B Gene

GenomeRNAi human phenotypes for FAM230B:
genes like me logo Genes that share phenotypes with FAM230B: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM230B Gene

Localization for FAM230B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM230B Gene

Pathways & Interactions for FAM230B Gene

SuperPathways for FAM230B Gene

No Data Available

Interacting Proteins for FAM230B Gene

Gene Ontology (GO) - Biological Process for FAM230B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM230B Gene

Drugs & Compounds for FAM230B Gene

No Compound Related Data Available

Transcripts for FAM230B Gene

mRNA/cDNA for FAM230B Gene

(1) REFSEQ mRNAs :
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM230B Gene

No ASD Table

Relevant External Links for FAM230B Gene

GeneLoc Exon Structure for
FAM230B
ECgene alternative splicing isoforms for
FAM230B

Expression for FAM230B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM230B Gene

mRNA differential expression in normal tissues according to GTEx for FAM230B Gene

This gene is overexpressed in Testis (x49.0).

NURSA nuclear receptor signaling pathways regulating expression of FAM230B Gene:

FAM230B
genes like me logo Genes that share expression patterns with FAM230B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM230B Gene

Orthologs for FAM230B Gene

Evolution for FAM230B Gene

ENSEMBL:
Gene Tree for FAM230B (if available)
TreeFam:
Gene Tree for FAM230B (if available)

No data available for Orthologs for FAM230B Gene

Paralogs for FAM230B Gene

No data available for Paralogs for FAM230B Gene

Variants for FAM230B Gene

Sequence variations from dbSNP and Humsavar for FAM230B Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000220196 -- 21,191,017(+) TTCTA(C/T)GTAGC intron-variant
rs1000700035 -- 21,188,309(+) TGTTC(C/T)CTTCC intron-variant
rs1000705546 -- 21,166,628(+) ATTCC(C/G)AAATT upstream-variant-2KB
rs1002445888 -- 21,166,579(+) TGGCA(C/G)CTGTT upstream-variant-2KB
rs1003095839 -- 21,176,714(+) AACCA(-/T)TTGAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM230B Gene

Variant ID Type Subtype PubMed ID
dgv2580e59 CNV duplication 20981092
dgv2581e59 CNV duplication 20981092
dgv4483n100 CNV gain 25217958
dgv4486n100 CNV gain 25217958
esv2678175 CNV deletion 23128226
esv2760719 CNV gain 21179565
esv2763699 CNV gain+loss 21179565
esv28075 CNV gain+loss 19812545
esv3340517 CNV duplication 20981092
esv3359610 CNV duplication 20981092
esv3365849 CNV duplication 20981092
esv3370194 CNV duplication 20981092
esv3407866 CNV duplication 20981092
esv3417871 CNV duplication 20981092
esv3424875 CNV duplication 20981092
esv3435487 CNV duplication 20981092
nsv1078511 CNV duplication 25765185
nsv1078512 CNV duplication 25765185
nsv1110394 CNV duplication 24896259
nsv1115632 CNV duplication 24896259
nsv1151856 CNV duplication 26484159
nsv191429 CNV deletion 16902084
nsv191577 CNV deletion 16902084
nsv436864 CNV insertion 17901297
nsv437849 CNV loss 16327808
nsv469751 CNV gain 16826518
nsv471490 CNV gain 19718026
nsv471595 CNV gain+loss 15918152
nsv514962 CNV gain 21397061
nsv588309 CNV loss 21841781
nsv834142 CNV gain 17160897
nsv834143 CNV gain+loss 17160897
nsv834144 CNV gain 17160897
nsv953036 CNV duplication 24416366
nsv962762 CNV duplication 23825009
nsv962836 CNV duplication 23825009
nsv962837 CNV duplication 23825009
nsv962839 CNV duplication 23825009
nsv964674 CNV duplication 23825009
nsv966152 CNV duplication 23825009
nsv966154 CNV duplication 23825009
nsv979713 CNV duplication 23825009

Relevant External Links for FAM230B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM230B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM230B Gene

Disorders for FAM230B Gene

Relevant External Links for FAM230B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM230B

No disorders were found for FAM230B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM230B Gene

Publications for FAM230B Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for FAM230B Gene

Sources for FAM230B Gene

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