FAM22F Gene
protein-coding GIFtS: 36
GCID: GC09M097077
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family with sequence similarity 22, member F
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Aliases
for FAM22F gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Family With Sequence Similarity 22, Member F1 2 | | DKFZp434I11171 | | Protein FAM22F2 |
Export aliases for FAM22F gene to outside databasesPrevious GC identifers: GC09U900579 GC09M094162 GC09M096120 |
Summaries
for FAM22F gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for FAM22F gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000009.11 NC_018920.1 NT_008470.19
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the FAM22F gene promoter:
Sox5 AML1a POU3F2 RORalpha2 GATA-1 AREB6 PPAR-gamma1 c-Rel Zic1 PPAR-gamma2
Other transcription factors
Search SABiosciences Chromatin IP Primers for FAM22F
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FAM22F |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 9q22.32 Ensembl cytogenetic band: 9q22.32 HGNC cytogenetic band: 9q22.32FAM22F Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 9 GeneLoc Exon Structure GeneLoc location for GC09M097077: view genomic region
(about GC identifiers)
Start:
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97,077,605 bp from pter |
End:
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97,090,926 bp from pter |
Size:
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13,322 bases |
Orientation:
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minus strand |
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Proteins
for FAM22F gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: FA22F_HUMAN, A1L443 (See
protein sequence)Recommended Name: Protein FAM22F Size: 756 amino acids; 80770 Da
Sequence caution: Sequence=CAI13277.1; Type=Erroneous gene model prediction; Sequence=CAI13278.1; Type=Erroneous genemodel prediction;
Secondary accessions: B6ZDF0 Q5SR58 Q5SR59 Q9UFB1Explore the universe of human proteins at neXtProt for FAM22F: NX_A1L443
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_A1L443
FAM22F Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_060031.1
ENSEMBL proteins: ENSP00000253262 ENSP00000335067 ENSP00000343865
Human Recombinant Protein Products for FAM22F:
FAM22F Antibody Products:
Assay Products for FAM22F: |
Protein
Domains /
Families
for FAM22F gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
FAM22F for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry A1L443ProtoNet protein and cluster: A1L443 UniProtKB/Swiss-Prot: FA22F_HUMAN, A1L443Similarity: Belongs to the FAM22 family |
Function
for FAM22F gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Animal Models:
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for FAM22F
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for FAM22F
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: FAM22F (NM_017561) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for FAM22F | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat FAM22F |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM22F |
|
Pathways & Interactions
for FAM22F gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for FAM22F
|
Drugs & Compounds
for FAM22F gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for FAM22F
Search CenterWatch for drugs/clinical trials and news about FAM22F / FA22F
|
Transcripts
for FAM22F gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for FAM22F gene: NM_017561.1 Unigene Cluster for FAM22F: Family with sequence similarity 22, member F Hs.648183 [show with all ESTs]Unigene Representative Sequence: NM_0175613 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000253262(uc004aup.1) ENST00000335456 ENST00000341207
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for FAM22F
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for FAM22F
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: FAM22F (NM_017561) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for FAM22F | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat FAM22F |
Additional cDNA sequence: AL133071.1 BC130390.1 BC143798.1 2 DOTS entries: DT.95317577 DT.102838481 4 AceView cDNA sequences: AL133071 BV197524 BV197523 BV197525
GeneLoc Exon Structure
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Expression
for FAM22F gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| FAM22F expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GGGCAGACTC
About this image
See FAM22F Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for FAM22F
SOURCE GeneReport for Unigene cluster: Hs.648183
SABiosciences Custom PCR Arrays for FAM22F
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for FAM22F
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat FAM22F | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat FAM22F | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat FAM22F | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM22F |
Orthologs
for FAM22F gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of chordates.
Orthologs for FAM22F gene from 1/6 species (see all 6) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
lizard
(Anolis carolinensis) |
Reptilia |
-- |
-- |
50(a) |
1 → many |
GL343220.1(852503-857458) |
ENSEMBL Gene Tree for FAM22F (if available)
TreeFam Gene Tree for FAM22F (if available) |
Paralogs
for FAM22F gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for FAM22F gene
- FAM22G1 2 FAM22A2 FAM22D2 C15orf552 FAM22B2 FAM22E2
9 SIMAP similar genes for FAM22F using alignment to 4 protein entries: FA22F_HUMAN (see all proteins):FAM22G YWHAE/FAM22A fusion YWHAE/FAM22B fusion FAM22B FAM22E FAM22A
FAM22D NUT C15orf55
FAM22F for paralogs About GeneDecksing
|
Genomic Variants
for FAM22F gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 9 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
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HapMap Linkage Disequilibrium report for FAM22F (97077605 - 97090926 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for FAM22F
1 CNV: 70770 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing FAM22F |
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Disorders
/ Diseases
for FAM22F gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Publications
for FAM22F gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for FAM22F gene integrated from 9 sources:
(articles sorted by number of sources associating them with FAM22F) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (2007)
- DNA sequence and analysis of human chromosome 9. (PubMed id 15164053)2 Humphray S.J.... Dunham I. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
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External Searches for FAM22F gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing FAM22F gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing FAM22F gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing FAM22F gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for FAM22F | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for FAM22F gene:
Search GeneIP for patents involving FAM22F
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for FAM22F gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section
|
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| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for FAM22F | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for FAM22F | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for FAM22F | | | Browse OriGene Protein Over-expression Lysates | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for FAM22F | | Browse 3'-UTR reporter clones for miRNA target validation | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for FAM22F | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for FAM22F | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat FAM22F | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing FAM22F | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FAM22F | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat FAM22F | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat FAM22F | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat FAM22F |
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| | | | Search Tocris compounds for FAM22F |
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 | | | FAM22F Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM22F |
|  |  |  |  | | | | Search ThermoFisher Antibodies for FAM22F |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat FAM22F |
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