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Aliases for FAM229A Gene

Aliases for FAM229A Gene

  • Family With Sequence Similarity 229 Member A 2 3 5
  • Family With Sequence Similarity 229, Member A 2

External Ids for FAM229A Gene

Previous GeneCards Identifiers for FAM229A Gene

  • GC01M032827
  • GC01M032832

Summaries for FAM229A Gene

GeneCards Summary for FAM229A Gene

FAM229A (Family With Sequence Similarity 229 Member A) is a Protein Coding gene. An important paralog of this gene is FAM229B.

Additional gene information for FAM229A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM229A Gene

Genomics for FAM229A Gene

Regulatory Elements for FAM229A Gene

Enhancers for FAM229A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H033126 2.1 FANTOM5 Ensembl ENCODE dbSUPER 20.8 -763.5 -763537 3 HDGF PKNOX1 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 TSSK3 TXLNA RBBP4 FAM229A ZBTB8B AZIN2 ZSCAN20 ENSG00000239670 TRIM62 GC01P033128
GH01H032813 1.7 FANTOM5 ENCODE dbSUPER 22 -453.0 -452964 7 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A RBBP4 KHDRBS1 ZBTB8A TXLNA TMEM39B S100PBP KPNA6 ZSCAN20 TSSK3 FAM229A
GH01H032390 1.4 Ensembl ENCODE 22.3 -28.7 -28722 5 YBX1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A NBN NR2C1 TSSK3 FAM229A TXLNA RBBP4 TMEM39B LOC105378629 MARCKSL1 HDAC1 KHDRBS1 BSDC1
GH01H032289 1.2 ENCODE 22.2 +73.0 72959 3 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 SNRNP40 RBBP4 KHDRBS1 TXLNA TSSK3 TMEM39B S100PBP ZBTB8A FAM229A DCDC2B
GH01H032271 1.5 Ensembl ENCODE dbSUPER 16.2 +90.7 90729 5 ZNF493 ZNF133 GLI4 ETS1 ZNF121 GLIS2 SP3 YY2 NCOA1 SMARCA4 RBBP4 ZBTB8A TXLNA KHDRBS1 IQCC SNRNP40 S100PBP ZBTB8B ENSG00000224066 ZNF362
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM229A on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM229A Gene

Chromosome:
1
Start:
32,361,270 bp from pter
End:
32,364,278 bp from pter
Size:
3,009 bases
Orientation:
Minus strand

Genomic View for FAM229A Gene

Genes around FAM229A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM229A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM229A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM229A Gene

Proteins for FAM229A Gene

  • Protein details for FAM229A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    H3BQW9-F229A_HUMAN
    Recommended name:
    Protein FAM229A
    Protein Accession:
    H3BQW9

    Protein attributes for FAM229A Gene

    Size:
    127 amino acids
    Molecular mass:
    12972 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM229A Gene

Post-translational modifications for FAM229A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM229A Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FAM229A Gene

Domains & Families for FAM229A Gene

Gene Families for FAM229A Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for FAM229A Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

H3BQW9

UniProtKB/Swiss-Prot:

F229A_HUMAN :
  • Belongs to the FAM229 family.
Family:
  • Belongs to the FAM229 family.
genes like me logo Genes that share domains with FAM229A: view

No data available for Suggested Antigen Peptide Sequences for FAM229A Gene

Function for FAM229A Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM229A Gene

Localization for FAM229A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM229A Gene

Pathways & Interactions for FAM229A Gene

SuperPathways for FAM229A Gene

No Data Available

Interacting Proteins for FAM229A Gene

Gene Ontology (GO) - Biological Process for FAM229A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM229A Gene

Drugs & Compounds for FAM229A Gene

No Compound Related Data Available

Transcripts for FAM229A Gene

mRNA/cDNA for FAM229A Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM229A Gene

Family with sequence similarity 229, member A:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM229A Gene

No ASD Table

Relevant External Links for FAM229A Gene

GeneLoc Exon Structure for
FAM229A
ECgene alternative splicing isoforms for
FAM229A

Expression for FAM229A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM229A Gene

mRNA differential expression in normal tissues according to GTEx for FAM229A Gene

This gene is overexpressed in Testis (x16.9).

NURSA nuclear receptor signaling pathways regulating expression of FAM229A Gene:

FAM229A

SOURCE GeneReport for Unigene cluster for FAM229A Gene:

Hs.660539
genes like me logo Genes that share expression patterns with FAM229A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM229A Gene

Orthologs for FAM229A Gene

This gene was present in the common ancestor of mammals.

Orthologs for FAM229A Gene

Organism Taxonomy Gene Similarity Type Details
oppossum
(Monodelphis domestica)
Mammalia FAM229A 34
  • 93 (a)
OneToOne
cow
(Bos Taurus)
Mammalia LOC614396 33
  • 92.91 (n)
FAM229A 34
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FAM229A 33
  • 91.33 (n)
rat
(Rattus norvegicus)
Mammalia Fam229a 33
  • 89.16 (n)
mouse
(Mus musculus)
Mammalia Fam229a 33 16 34
  • 88.62 (n)
Species where no ortholog for FAM229A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FAM229A Gene

ENSEMBL:
Gene Tree for FAM229A (if available)
TreeFam:
Gene Tree for FAM229A (if available)

Paralogs for FAM229A Gene

Paralogs for FAM229A Gene

(1) SIMAP similar genes for FAM229A Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with FAM229A: view

Variants for FAM229A Gene

Sequence variations from dbSNP and Humsavar for FAM229A Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000068694 -- 32,362,322(+) CGCGC(A/G)TTCCC upstream-variant-2KB, utr-variant-5-prime
rs1000652777 -- 32,361,200(+) GGAAG(A/G)GAAAG intron-variant, upstream-variant-2KB
rs1000982482 -- 32,360,986(+) TGTTC(C/T)CCGCT intron-variant, upstream-variant-2KB
rs1002459355 -- 32,361,849(+) TCCTG(A/G)GCGCT upstream-variant-2KB, reference, synonymous-codon
rs1002472014 -- 32,360,794(+) TGAAC(A/G)GAGAT intron-variant, upstream-variant-2KB

Variation tolerance for FAM229A Gene

Gene Damage Index Score: 4.04; 60.57% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FAM229A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM229A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for FAM229A Gene

Disorders for FAM229A Gene

Relevant External Links for FAM229A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM229A

No disorders were found for FAM229A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM229A Gene

Publications for FAM229A Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 4 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 60

Products for FAM229A Gene

Sources for FAM229A Gene

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