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Aliases for FAM226B Gene

Subcategory (RNA class) for FAM226B Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM226B Gene

  • Family With Sequence Similarity 226 Member B (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 246B 2 3
  • Non-Protein Coding RNA 246B 2 3
  • Family With Sequence Similarity 226, Member B (Non-Protein Coding) 2
  • Chromosome X Open Reading Frame 50B 2
  • NCRNA00246B 3
  • HCG1731871 3
  • LINC00246B 3
  • CXorf50B 3

External Ids for FAM226B Gene

Previous HGNC Symbols for FAM226B Gene

  • CXorf50B
  • NCRNA00246B
  • LINC00246B

Previous GeneCards Identifiers for FAM226B Gene

  • GC0XP071998

Summaries for FAM226B Gene

GeneCards Summary for FAM226B Gene

FAM226B (Family With Sequence Similarity 226 Member B (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAM226B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM226B Gene

Genomics for FAM226B Gene

GeneHancer (GH) Regulatory Elements for FAM226B Gene

Promoters and enhancers for FAM226B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI072776 Promoter 0.5 Ensembl 550.8 +0.2 228 1 DMRTC1B FAM226B FAM236B
GH0XI073213 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE 6.9 +437.7 437682 1.9 PKNOX1 BACH1 SIN3A YY1 ZFHX2 POLR2A ZNF143 NFE2 ZNF362 SP2 NAP1L2 FAM226B PIR55030
GH0XI072571 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 4 -204.3 -204322 1.9 PKNOX1 CLOCK ARNT ARID4B SIN3A ZNF2 YY1 ZNF766 E2F8 ZNF207 HDAC8 TOMM20P4 FAM226B GC0XM072378 RNU2-68P
GH0XI072619 Enhancer 1 Ensembl ENCODE 5 -155.6 -155582 3.7 ATF1 FOXA2 INSM2 KLF17 BATF IRF4 BRCA1 RFX5 ZNF366 FOS LOC101928380 FAM226B LOC100499496 HDAC8 PHKA1
GH0XI073576 Enhancer 0.6 ENCODE 4.5 +800.4 800381 2 JUND RFX1 JUN CEBPB FOSL2 BMI1 EP300 RFX5 TCF7L2 CHIC1 FAM226B NAP1L6 PIR39676 GC0XM073547
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FAM226B on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAM226B Gene

Genomic Locations for FAM226B Gene
chrX:72,777,073-72,779,097
(GRCh38/hg38)
Size:
2,025 bases
Orientation:
Plus strand
chrX:71,996,897-71,998,921
(GRCh37/hg19)

Genomic View for FAM226B Gene

Genes around FAM226B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM226B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM226B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM226B Gene

Proteins for FAM226B Gene

Post-translational modifications for FAM226B Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM226B Gene

Domains & Families for FAM226B Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM226B Gene

Function for FAM226B Gene

Phenotypes From GWAS Catalog for FAM226B Gene

Phenotypes for FAM226B Gene

GenomeRNAi human phenotypes for FAM226B:
genes like me logo Genes that share phenotypes with FAM226B: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM226B Gene

Localization for FAM226B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM226B Gene

Pathways & Interactions for FAM226B Gene

SuperPathways for FAM226B Gene

No Data Available

Interacting Proteins for FAM226B Gene

Gene Ontology (GO) - Biological Process for FAM226B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM226B Gene

Drugs & Compounds for FAM226B Gene

No Compound Related Data Available

Transcripts for FAM226B Gene

mRNA/cDNA for FAM226B Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM226B Gene

Family with sequence similarity 226, member B (non-protein coding):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM226B Gene

No ASD Table

Relevant External Links for FAM226B Gene

GeneLoc Exon Structure for
FAM226B
ECgene alternative splicing isoforms for
FAM226B

Expression for FAM226B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM226B Gene

mRNA expression in normal human tissues for FAM226B Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM226B Gene:

FAM226B

SOURCE GeneReport for Unigene cluster for FAM226B Gene:

Hs.592230
genes like me logo Genes that share expression patterns with FAM226B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM226B Gene

Orthologs for FAM226B Gene

Evolution for FAM226B Gene

ENSEMBL:
Gene Tree for FAM226B (if available)
TreeFam:
Gene Tree for FAM226B (if available)

No data available for Orthologs for FAM226B Gene

Paralogs for FAM226B Gene

No data available for Paralogs for FAM226B Gene

Variants for FAM226B Gene

Sequence variations from dbSNP and Humsavar for FAM226B Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs113159034 -- 72,777,630(+) G/T non_coding_transcript_variant
rs139016279 -- 72,776,985(+) C/G upstream_transcript_variant
rs200152146 -- 72,778,629(+) C/ non_coding_transcript_variant
rs34078631 -- 72,776,711(+) T/C upstream_transcript_variant
rs372654835 -- 72,778,629(+) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for FAM226B Gene

Variant ID Type Subtype PubMed ID
esv25077 CNV gain 19812545
nsv7450 OTHER inversion 18451855

Additional Variant Information for FAM226B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM226B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM226B Gene

Disorders for FAM226B Gene

Additional Disease Information for FAM226B

No disorders were found for FAM226B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM226B Gene

Publications for FAM226B Gene

  1. Identification of a new cancer/testis gene family, CT47, among expressed multicopy genes on the human X chromosome. (PMID: 16382448) Chen YT … Jongeneel CV (Genes, chromosomes & cancer 2006) 2 3 58
  2. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross MT … Bentley DR (Nature 2005) 3 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  5. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for FAM226B Gene

Sources for FAM226B Gene

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