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Aliases for FAM226B Gene

Subcategory (RNA class) for FAM226B Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for FAM226B Gene

  • Family With Sequence Similarity 226 Member B (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 246B 2 3
  • Non-Protein Coding RNA 246B 2 3
  • Family With Sequence Similarity 226, Member B (Non-Protein Coding) 2
  • Chromosome X Open Reading Frame 50B 2
  • NCRNA00246B 3
  • HCG1731871 3
  • LINC00246B 3
  • CXorf50B 3

External Ids for FAM226B Gene

Previous HGNC Symbols for FAM226B Gene

  • CXorf50B
  • NCRNA00246B
  • LINC00246B

Previous GeneCards Identifiers for FAM226B Gene

  • GC0XP071998

Summaries for FAM226B Gene

GeneCards Summary for FAM226B Gene

FAM226B (Family With Sequence Similarity 226 Member B (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM226B Gene

Genomics for FAM226B Gene

Regulatory Elements for FAM226B Gene


Promoters for FAM226B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001917698 228 1400 SMARCE1 PKNOX1 KLF1 TAL1 SIN3A FOXA1 ARID1B GATA3 CTBP1

Genomic Location for FAM226B Gene

Chromosome:
X
Start:
72,777,073 bp from pter
End:
72,779,095 bp from pter
Size:
2,023 bases
Orientation:
Plus strand

Genomic View for FAM226B Gene

Genes around FAM226B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM226B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM226B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM226B Gene

Proteins for FAM226B Gene

Post-translational modifications for FAM226B Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM226B Gene

Domains & Families for FAM226B Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM226B Gene

Function for FAM226B Gene

Phenotypes for FAM226B Gene

GenomeRNAi human phenotypes for FAM226B:
genes like me logo Genes that share phenotypes with FAM226B: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM226B Gene

Localization for FAM226B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM226B Gene

Pathways & Interactions for FAM226B Gene

SuperPathways for FAM226B Gene

No Data Available

Interacting Proteins for FAM226B Gene

Gene Ontology (GO) - Biological Process for FAM226B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM226B Gene

Transcripts for FAM226B Gene

mRNA/cDNA for FAM226B Gene

(2) Additional mRNA sequences :

Unigene Clusters for FAM226B Gene

Family with sequence similarity 226, member B (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM226B Gene

No ASD Table

Relevant External Links for FAM226B Gene

GeneLoc Exon Structure for
FAM226B
ECgene alternative splicing isoforms for
FAM226B

Expression for FAM226B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM226B Gene

mRNA expression in normal human tissues for FAM226B Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM226B Gene:

FAM226B

SOURCE GeneReport for Unigene cluster for FAM226B Gene:

Hs.592230
genes like me logo Genes that share expression patterns with FAM226B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FAM226B Gene

Orthologs for FAM226B Gene

No data available for Orthologs and Evolution for FAM226B Gene

Paralogs for FAM226B Gene

No data available for Paralogs for FAM226B Gene

Variants for FAM226B Gene

Sequence variations from dbSNP and Humsavar for FAM226B Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs113159034 -- 72,777,630(+) AAAAG(G/T)GCAGA intron-variant, nc-transcript-variant
rs139016279 -- 72,776,985(+) CTCCT(C/G)CTCCT upstream-variant-2KB
rs200152146 -- 72,778,629(+) ACTTT(-/C)TTTTA intron-variant, nc-transcript-variant
rs372654835 -- 72,778,629(+) ACTTT(C/T)TTTTA intron-variant, nc-transcript-variant
rs375042088 -- 72,778,731(+) TTTTT(-/T)CAAAA intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM226B Gene

Variant ID Type Subtype PubMed ID
esv25077 CNV gain 19812545
nsv7450 OTHER inversion 18451855

Relevant External Links for FAM226B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM226B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM226B Gene

Disorders for FAM226B Gene

Relevant External Links for FAM226B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM226B

No disorders were found for FAM226B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM226B Gene

Publications for FAM226B Gene

  1. Identification of a new cancer/testis gene family, CT47, among expressed multicopy genes on the human X chromosome. (PMID: 16382448) Chen Y.-T. … Jongeneel C.V. (Genes Chromosomes Cancer 2006) 2 3 64
  2. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  5. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64

Products for FAM226B Gene

Sources for FAM226B Gene

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