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Aliases for FAM225B Gene

Subcategory (RNA class) for FAM225B Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM225B Gene

  • Family With Sequence Similarity 225 Member B (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 256B 2 3
  • Non-Protein Coding RNA 256B 2 3
  • Family With Sequence Similarity 225, Member B (Non-Protein Coding) 2
  • Chromosome 9 Open Reading Frame 110 2
  • NCRNA00256B 3
  • LINC00256B 3
  • C9orf110 3

External Ids for FAM225B Gene

Previous HGNC Symbols for FAM225B Gene

  • C9orf110
  • NCRNA00256B
  • LINC00256B

Previous GeneCards Identifiers for FAM225B Gene

  • GC09M115877
  • GC09M115881
  • GC09M115882
  • GC09M115899

Summaries for FAM225B Gene

GeneCards Summary for FAM225B Gene

FAM225B (Family With Sequence Similarity 225 Member B (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM225B Gene

Genomics for FAM225B Gene

Regulatory Elements for FAM225B Gene

Enhancers for FAM225B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F113131 0.9 FANTOM5 8.7 -20.1 -20149 0.4 ARID4B ZSCAN9 ZNF644 RARA CHAMP1 ZNF316 MAFK MIER1 KLF6 MAFG SLC31A2 INIP FKBP15 SLC31A1 CDC26 PRPF4 FAM225B HDHD3 RGS3 SNX30
GH09F113125 0.3 FANTOM5 7.2 -14.0 -13980 0.3 STAT1 SLC31A2 SLC46A2 FAM225B SNX30 RGS3 PIR44474
GH09F113138 1.3 FANTOM5 ENCODE 5.6 -27.9 -27857 1.7 ELF3 ATF1 MLX ARID4B THRB ZNF48 ZSCAN9 RARA GATA4 MIXL1 FAM225B ALAD ZNF883 SLC31A2 PIR44474
GH09F112172 1 FANTOM5 ENCODE 4.3 +936.6 936574 4.6 HDGF PKNOX1 ARID4B ZNF48 GLIS2 REST KAT8 CREB3 SMARCA4 PBX2 SUSD1 FAM225B RPL29P20
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around FAM225B on UCSC Golden Path with GeneCards custom track

Promoters for FAM225B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001912548 377 1001 CTCF ZNF654 REST RAD21
ENSR00001912549 -1523 801 CTCF ZNF654 RAD21

Genomic Location for FAM225B Gene

Chromosome:
9
Start:
113,103,338 bp from pter
End:
113,111,677 bp from pter
Size:
8,340 bases
Orientation:
Minus strand

Genomic View for FAM225B Gene

Genes around FAM225B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM225B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM225B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM225B Gene

Proteins for FAM225B Gene

Post-translational modifications for FAM225B Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM225B Gene

Domains & Families for FAM225B Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM225B Gene

Function for FAM225B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM225B Gene

Localization for FAM225B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM225B Gene

Pathways & Interactions for FAM225B Gene

SuperPathways for FAM225B Gene

No Data Available

Interacting Proteins for FAM225B Gene

Gene Ontology (GO) - Biological Process for FAM225B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM225B Gene

Transcripts for FAM225B Gene

mRNA/cDNA for FAM225B Gene

(10) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM225B Gene

Family with sequence similarity 225, member B (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM225B Gene

No ASD Table

Relevant External Links for FAM225B Gene

GeneLoc Exon Structure for
FAM225B
ECgene alternative splicing isoforms for
FAM225B

Expression for FAM225B Gene

mRNA expression in normal human tissues for FAM225B Gene

mRNA differential expression in normal tissues according to GTEx for FAM225B Gene

This gene is overexpressed in Testis (x29.9).

NURSA nuclear receptor signaling pathways regulating expression of FAM225B Gene:

FAM225B

SOURCE GeneReport for Unigene cluster for FAM225B Gene:

Hs.99052
genes like me logo Genes that share expression patterns with FAM225B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FAM225B Gene

Orthologs for FAM225B Gene

Evolution for FAM225B Gene

ENSEMBL:
Gene Tree for FAM225B (if available)
TreeFam:
Gene Tree for FAM225B (if available)

No data available for Orthologs for FAM225B Gene

Paralogs for FAM225B Gene

No data available for Paralogs for FAM225B Gene

Variants for FAM225B Gene

Sequence variations from dbSNP and Humsavar for FAM225B Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs10817438 -- 113,112,408(+) TTTGC(C/T)CAGCT upstream-variant-2KB
rs10817439 -- 113,112,526(+) GAGAA(G/T)AAAAT upstream-variant-2KB
rs10817440 -- 113,112,714(+) CAAAT(C/T)TTTCT upstream-variant-2KB
rs10981632 -- 113,105,534(+) CTCAG(C/T)GGTGA nc-transcript-variant
rs112360315 -- 113,112,249(+) AAAGT(C/T)AGAGA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FAM225B Gene

Variant ID Type Subtype PubMed ID
dgv1232n67 CNV gain 20364138
dgv12853n54 CNV loss 21841781
dgv2180e212 CNV gain 25503493
dgv279n111 CNV duplication 26073780
dgv7704n100 CNV loss 25217958
dgv943n27 CNV loss 19166990
dgv944n27 CNV loss 19166990
esv1001772 OTHER inversion 20482838
esv2421517 CNV deletion 20811451
esv2759710 CNV gain 17122850
esv2761253 CNV loss 21179565
esv3545336 CNV deletion 23714750
esv3621529 CNV loss 21293372
esv3621530 CNV gain 21293372
esv3621531 CNV loss 21293372
esv3891713 CNV loss 25118596
esv3891715 CNV gain 25118596
esv3891716 CNV loss 25118596
nsv1038932 CNV loss 25217958
nsv1043365 CNV loss 25217958
nsv1047252 CNV gain+loss 25217958
nsv442164 CNV gain+loss 18776908
nsv466495 CNV gain 19166990
nsv471318 CNV gain 18288195
nsv515822 CNV loss 19592680
nsv615209 CNV gain+loss 21841781
nsv7431 OTHER inversion 18451855
nsv831691 CNV loss 17160897
nsv982338 CNV duplication 23825009

Relevant External Links for FAM225B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM225B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM225B Gene

Disorders for FAM225B Gene

Relevant External Links for FAM225B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM225B

No disorders were found for FAM225B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM225B Gene

Publications for FAM225B Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A. … Carmell M.A. (Nature 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FAM225B Gene

Sources for FAM225B Gene

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