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Aliases for FAM225A Gene

Subcategory (RNA class) for FAM225A Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM225A Gene

  • Family With Sequence Similarity 225 Member A (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 256A 2 3
  • Non-Protein Coding RNA 256A 2 3
  • Family With Sequence Similarity 225, Member A (Non-Protein Coding) 2
  • Chromosome 9 Open Reading Frame 109 2
  • NCRNA00256A 3
  • LINC00256A 3
  • C9orf109 3

External Ids for FAM225A Gene

Previous HGNC Symbols for FAM225A Gene

  • C9orf109
  • NCRNA00256A
  • LINC00256A

Previous GeneCards Identifiers for FAM225A Gene

  • GC09P116083
  • GC09P116351
  • GC09P116479
  • GC09P116828

Summaries for FAM225A Gene

GeneCards Summary for FAM225A Gene

FAM225A (Family With Sequence Similarity 225 Member A (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAM225A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM225A Gene

Genomics for FAM225A Gene

GeneHancer (GH) Regulatory Elements for FAM225A Gene

Promoters and enhancers for FAM225A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I113111 Promoter 0.8 Ensembl 550.8 -1.5 -1495 0.4 CTCF NFIC NFIB ZNF143 REST ZNF444 RAD21 FAM225B FAM225A GC09P114262 GC09P114503 GC09P114639 PIR36031 PIR37596 PIR34825 GC09M113112 GC09M113106
GH09I113113 Promoter 0.8 Ensembl 550.8 +0.3 305 0.4 CTCF NFIC NFIB RAD21 FAM225A FAM225B GC09P114184 GC09P114223 GC09P114229 GC09P114248 GC09P114253 GC09P114254 GC09P114256 GC09P114262
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FAM225A on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAM225A Gene

Genomic Locations for FAM225A Gene
chr9:113,112,896-113,119,928
(GRCh38/hg38)
Size:
7,033 bases
Orientation:
Plus strand
chr9:115,875,176-115,882,208
(GRCh37/hg19)

Genomic View for FAM225A Gene

Genes around FAM225A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM225A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM225A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM225A Gene

Proteins for FAM225A Gene

Post-translational modifications for FAM225A Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM225A Gene

Domains & Families for FAM225A Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM225A Gene

Function for FAM225A Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM225A Gene

Localization for FAM225A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM225A Gene

Pathways & Interactions for FAM225A Gene

SuperPathways for FAM225A Gene

No Data Available

Interacting Proteins for FAM225A Gene

Gene Ontology (GO) - Biological Process for FAM225A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM225A Gene

Drugs & Compounds for FAM225A Gene

No Compound Related Data Available

Transcripts for FAM225A Gene

mRNA/cDNA for FAM225A Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM225A Gene

No ASD Table

Relevant External Links for FAM225A Gene

GeneLoc Exon Structure for
FAM225A
ECgene alternative splicing isoforms for
FAM225A

Expression for FAM225A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM225A Gene

mRNA differential expression in normal tissues according to GTEx for FAM225A Gene

This gene is overexpressed in Testis (x27.8) and Brain - Spinal cord (cervical c-1) (x4.9).

NURSA nuclear receptor signaling pathways regulating expression of FAM225A Gene:

FAM225A
genes like me logo Genes that share expression patterns with FAM225A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM225A Gene

Orthologs for FAM225A Gene

Evolution for FAM225A Gene

ENSEMBL:
Gene Tree for FAM225A (if available)
TreeFam:
Gene Tree for FAM225A (if available)

No data available for Orthologs for FAM225A Gene

Paralogs for FAM225A Gene

No data available for Paralogs for FAM225A Gene

Variants for FAM225A Gene

Sequence variations from dbSNP and Humsavar for FAM225A Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000529952 -- 113,112,830(+) A/G upstream_transcript_variant
rs1003258515 -- 113,118,988(+) G/A non_coding_transcript_variant
rs1003989351 -- 113,111,486(+) G/A/C upstream_transcript_variant
rs1005788068 -- 113,112,320(+) A/C/T upstream_transcript_variant
rs1006316381 -- 113,120,102(+) C/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for FAM225A Gene

Variant ID Type Subtype PubMed ID
dgv1232n67 CNV gain 20364138
dgv1502e214 CNV gain 21293372
dgv2180e212 CNV gain 25503493
dgv279n111 CNV duplication 26073780
dgv7704n100 CNV loss 25217958
dgv7705n100 CNV gain 25217958
esv1001772 OTHER inversion 20482838
esv2759710 CNV gain 17122850
esv2761253 CNV loss 21179565
esv3621529 CNV loss 21293372
esv3621530 CNV gain 21293372
esv3621531 CNV loss 21293372
esv3891715 CNV gain 25118596
esv3891716 CNV loss 25118596
nsv1051654 CNV gain 25217958
nsv442164 CNV gain+loss 18776908
nsv831691 CNV loss 17160897
nsv972442 CNV duplication 23825009

Additional Variant Information for FAM225A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM225A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM225A Gene

Disorders for FAM225A Gene

Additional Disease Information for FAM225A

No disorders were found for FAM225A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM225A Gene

Publications for FAM225A Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for FAM225A Gene

Sources for FAM225A Gene

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