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Aliases for FAM223B Gene

Subcategory (RNA class) for FAM223B Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM223B Gene

  • Family With Sequence Similarity 223, Member B (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 204B 2 3
  • Non-Protein Coding RNA 204B 2 3
  • LINC00204B 3 4
  • CXorf52B 3 4
  • Chromosome X Open Reading Frame 52B 2
  • NCRNA00204B 3
  • CXorf52 3

External Ids for FAM223B Gene

Previous HGNC Symbols for FAM223B Gene

  • CXorf52B
  • NCRNA00204B
  • LINC00204B

Previous GeneCards Identifiers for FAM223B Gene

  • GC0XM153863

Summaries for FAM223B Gene

GeneCards Summary for FAM223B Gene

FAM223B (Family With Sequence Similarity 223, Member B (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM223B Gene

Genomics for FAM223B Gene

Genomic Location for FAM223B Gene

Start:
154,632,470 bp from pter
End:
154,633,182 bp from pter
Size:
713 bases
Orientation:
Minus strand

Genomic View for FAM223B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM223B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM223B Gene

No data available for Regulatory Elements for FAM223B Gene

Proteins for FAM223B Gene

  • Protein details for FAM223B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NKX1-F223B_HUMAN
    Recommended name:
    Protein FAM223B
    Protein Accession:
    A6NKX1
    Secondary Accessions:

    Protein attributes for FAM223B Gene

    Size:
    122 amino acids
    Molecular mass:
    13778 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM223B Gene

Proteomics data for FAM223B Gene at MOPED

Post-translational modifications for FAM223B Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM223B Gene

Domains for FAM223B Gene

Gene Families for FAM223B Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for FAM223B Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

A6NKX1

UniProtKB/Swiss-Prot:

F223B_HUMAN :
  • A6NKX1
Family:
  • Belongs to the FAM223 family.
genes like me logo Genes that share domains with FAM223B: view

No data available for Suggested Antigen Peptide Sequences for FAM223B Gene

Function for FAM223B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM223B Gene

Localization for FAM223B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM223B Gene

Pathways for FAM223B Gene

SuperPathways for FAM223B Gene

No Data Available

Interacting Proteins for FAM223B Gene

Gene Ontology (GO) - Biological Process for FAM223B Gene

None

No data available for Pathways by source for FAM223B Gene

Transcripts for FAM223B Gene

mRNA/cDNA for FAM223B Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM223B Gene

Family with sequence similarity 223, member B (non-protein coding):
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FAM223B

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for FAM223B
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM223B Gene

No ASD Table

Relevant External Links for FAM223B Gene

GeneLoc Exon Structure for
FAM223B
ECgene alternative splicing isoforms for
FAM223B

Expression for FAM223B Gene

SOURCE GeneReport for Unigene cluster for FAM223B Gene Hs.562090

No Expression Related Data Available

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for FAM223B Gene

Orthologs for FAM223B Gene

Evolution for FAM223B Gene

ENSEMBL:
Gene Tree for FAM223B (if available)
TreeFam:
Gene Tree for FAM223B (if available)

No data available for Orthologs for FAM223B Gene

Paralogs for FAM223B Gene

Selected SIMAP similar genes for FAM223B Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM223B: view

No data available for Paralogs for FAM223B Gene

Variants for FAM223B Gene

Sequence variations from dbSNP and Humsavar for FAM223B Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs140237195 -- 154,632,817(+) CTGCC(A/G)TAAGA nc-transcript-variant

Relevant External Links for FAM223B Gene

HapMap Linkage Disequilibrium report
FAM223B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for FAM223B Gene

Disorders for FAM223B Gene

No disorders were found for FAM223B Gene.

No data available for UniProtKB/Swiss-Prot for FAM223B Gene

Publications for FAM223B Gene

  1. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4
  2. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3

Products for FAM223B Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate FAM223B
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FAM223B
    • Block miRNA regulation of FAM223B using miScript Target Protectors

    Sources for FAM223B Gene

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