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Aliases for FAM222A-AS1 Gene

Subcategory (RNA class) for FAM222A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM222A-AS1 Gene

  • FAM222A Antisense RNA 1 2 3 5
  • FAM222A Antisense RNA 1 (Non-Protein Coding) 2

External Ids for FAM222A-AS1 Gene

Previous GeneCards Identifiers for FAM222A-AS1 Gene

  • GC12M110172

Summaries for FAM222A-AS1 Gene

GeneCards Summary for FAM222A-AS1 Gene

FAM222A-AS1 (FAM222A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM222A-AS1 Gene

Genomics for FAM222A-AS1 Gene

Regulatory Elements for FAM222A-AS1 Gene

Promoters for FAM222A-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around FAM222A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM222A-AS1 Gene

Chromosome:
12
Start:
109,734,166 bp from pter
End:
109,773,508 bp from pter
Size:
39,343 bases
Orientation:
Minus strand

Genomic View for FAM222A-AS1 Gene

Genes around FAM222A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM222A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM222A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM222A-AS1 Gene

Proteins for FAM222A-AS1 Gene

Post-translational modifications for FAM222A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM222A-AS1 Gene

Domains & Families for FAM222A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM222A-AS1 Gene

Function for FAM222A-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM222A-AS1 Gene

Localization for FAM222A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM222A-AS1 Gene

Pathways & Interactions for FAM222A-AS1 Gene

SuperPathways for FAM222A-AS1 Gene

No Data Available

Interacting Proteins for FAM222A-AS1 Gene

Gene Ontology (GO) - Biological Process for FAM222A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM222A-AS1 Gene

Drugs & Compounds for FAM222A-AS1 Gene

No Compound Related Data Available

Transcripts for FAM222A-AS1 Gene

mRNA/cDNA for FAM222A-AS1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM222A-AS1 Gene

FAM222A antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM222A-AS1 Gene

No ASD Table

Relevant External Links for FAM222A-AS1 Gene

GeneLoc Exon Structure for
FAM222A-AS1
ECgene alternative splicing isoforms for
FAM222A-AS1

Expression for FAM222A-AS1 Gene

mRNA expression in normal human tissues for FAM222A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FAM222A-AS1 Gene

This gene is overexpressed in Testis (x20.4) and Adrenal Gland (x4.7).

SOURCE GeneReport for Unigene cluster for FAM222A-AS1 Gene Hs.675961

genes like me logo Genes that share expression patterns with FAM222A-AS1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for FAM222A-AS1 Gene

Orthologs for FAM222A-AS1 Gene

Evolution for FAM222A-AS1 Gene

ENSEMBL:
Gene Tree for FAM222A-AS1 (if available)
TreeFam:
Gene Tree for FAM222A-AS1 (if available)

No data available for Orthologs for FAM222A-AS1 Gene

Paralogs for FAM222A-AS1 Gene

No data available for Paralogs for FAM222A-AS1 Gene

Variants for FAM222A-AS1 Gene

Sequence variations from dbSNP and Humsavar for FAM222A-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs7133196 -- 109,773,065(+) AGGAT(C/T)CTTCT intron-variant
rs7960658 -- 109,772,286(+) TGCCC(A/G)GTCCC intron-variant
rs11615724 -- 109,771,296(+) CCCAA(C/T)ATCAG intron-variant
rs12310773 -- 109,773,549(+) TCCCA(C/T)CCCCA upstream-variant-2KB
rs11296488 -- 109,772,072(+) CACTC(-/G)GGGAG intron-variant

Relevant External Links for FAM222A-AS1 Gene

HapMap Linkage Disequilibrium report
FAM222A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FAM222A-AS1 Gene

Disorders for FAM222A-AS1 Gene

Relevant External Links for FAM222A-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM222A-AS1

No disorders were found for FAM222A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM222A-AS1 Gene

Publications for FAM222A-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 67
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3

Products for FAM222A-AS1 Gene

Sources for FAM222A-AS1 Gene

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