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Aliases for FAM222A-AS1 Gene

Subcategory (RNA class) for FAM222A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM222A-AS1 Gene

  • FAM222A Antisense RNA 1 2 3 5
  • FAM222A Antisense RNA 1 (Non-Protein Coding) 2

External Ids for FAM222A-AS1 Gene

Previous GeneCards Identifiers for FAM222A-AS1 Gene

  • GC12M110172

Summaries for FAM222A-AS1 Gene

GeneCards Summary for FAM222A-AS1 Gene

FAM222A-AS1 (FAM222A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAM222A-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM222A-AS1 Gene

Genomics for FAM222A-AS1 Gene

Regulatory Elements for FAM222A-AS1 Gene

Enhancers for FAM222A-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H109736 1.2 ENCODE dbSUPER 17.6 +33.4 33388 6 ATF1 MLX ZFP64 ARID4B DMAP1 TCF12 GATA2 SP5 MXD4 MIER2 FAM222A-AS1 FAM222A TRPV4 GC12P109715
GH12H109751 0.9 ENCODE dbSUPER 17.3 +21.0 21017 1 SP5 POLR2A ARID4B RCOR1 FOXP2 KDM1A ZNF644 THRB NR2F2 FAM222A-AS1 FAM222A MMAB MVK RNU4-32P ENSG00000249094 GLTP GC12P109715
GH12H109517 1.2 Ensembl ENCODE dbSUPER 11.9 +254.5 254481 2 CTCF ZNF654 RB1 JUN BHLHE40 TRIM22 REST RAD21 POLR2A ZNF143 KCTD10 MVK FAM222A-AS1 RNU4-32P MMAB ENSG00000255655 PIR34953 PIR31921 GC12P109501
GH12H109734 0.7 ENCODE dbSUPER 16.6 +38.8 38846 0 REST RCOR1 FOXP2 FAM222A-AS1 FAM222A TRPV4 GC12P109715
GH12H109737 1 ENCODE dbSUPER 10.6 +36.7 36738 0 ATF1 SAP130 ARID4B BMI1 RARA POLR2A MAFK CREM RFX1 SP5 FAM222A FAM222A-AS1 TRPV4 GC12P109715
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM222A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM222A-AS1 Gene

Chromosome:
12
Start:
109,734,166 bp from pter
End:
109,773,508 bp from pter
Size:
39,343 bases
Orientation:
Minus strand

Genomic View for FAM222A-AS1 Gene

Genes around FAM222A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM222A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM222A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM222A-AS1 Gene

Proteins for FAM222A-AS1 Gene

Post-translational modifications for FAM222A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM222A-AS1 Gene

Domains & Families for FAM222A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM222A-AS1 Gene

Function for FAM222A-AS1 Gene

Phenotypes From GWAS Catalog for FAM222A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM222A-AS1 Gene

Localization for FAM222A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM222A-AS1 Gene

Pathways & Interactions for FAM222A-AS1 Gene

SuperPathways for FAM222A-AS1 Gene

No Data Available

Interacting Proteins for FAM222A-AS1 Gene

Gene Ontology (GO) - Biological Process for FAM222A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM222A-AS1 Gene

Drugs & Compounds for FAM222A-AS1 Gene

No Compound Related Data Available

Transcripts for FAM222A-AS1 Gene

mRNA/cDNA for FAM222A-AS1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM222A-AS1 Gene

FAM222A antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM222A-AS1 Gene

No ASD Table

Relevant External Links for FAM222A-AS1 Gene

GeneLoc Exon Structure for
FAM222A-AS1
ECgene alternative splicing isoforms for
FAM222A-AS1

Expression for FAM222A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM222A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FAM222A-AS1 Gene

This gene is overexpressed in Testis (x20.4) and Adrenal Gland (x4.7).

SOURCE GeneReport for Unigene cluster for FAM222A-AS1 Gene:

Hs.675961
genes like me logo Genes that share expression patterns with FAM222A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM222A-AS1 Gene

Orthologs for FAM222A-AS1 Gene

Evolution for FAM222A-AS1 Gene

ENSEMBL:
Gene Tree for FAM222A-AS1 (if available)
TreeFam:
Gene Tree for FAM222A-AS1 (if available)

No data available for Orthologs for FAM222A-AS1 Gene

Paralogs for FAM222A-AS1 Gene

No data available for Paralogs for FAM222A-AS1 Gene

Variants for FAM222A-AS1 Gene

Sequence variations from dbSNP and Humsavar for FAM222A-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000064963 -- 109,773,837(+) AGATT(C/T)GTCCT upstream-variant-2KB
rs1000085498 -- 109,774,393(+) GGAGT(A/G)TTCCC upstream-variant-2KB
rs1000143821 -- 109,734,730(+) TGACA(A/C/G)GGGGA intron-variant
rs1000178989 -- 109,740,251(+) GGGGC(A/G)TTATC intron-variant, upstream-variant-2KB
rs1000179986 -- 109,738,010(+) GGGAG(A/G)AAGAG intron-variant, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for FAM222A-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3630725 CNV loss 21293372
nsv478915 CNV novel sequence insertion 20440878

Relevant External Links for FAM222A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM222A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM222A-AS1 Gene

Disorders for FAM222A-AS1 Gene

Relevant External Links for FAM222A-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM222A-AS1

No disorders were found for FAM222A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM222A-AS1 Gene

Publications for FAM222A-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 60
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  3. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3 60

Products for FAM222A-AS1 Gene

Sources for FAM222A-AS1 Gene

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