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Aliases for FAM222A-AS1 Gene

Subcategory (RNA class) for FAM222A-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for FAM222A-AS1 Gene

  • FAM222A Antisense RNA 1 2 3
  • FAM222A Antisense RNA 1 (Non-Protein Coding) 2

External Ids for FAM222A-AS1 Gene

ORGUL Members for FAM222A-AS1 Gene

Previous GeneCards Identifiers for FAM222A-AS1 Gene

  • GC12M110172

Summaries for FAM222A-AS1 Gene

GeneCards Summary for FAM222A-AS1 Gene

FAM222A-AS1 (FAM222A Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM222A-AS1 Gene

Genomics for FAM222A-AS1 Gene

Genomic Location for FAM222A-AS1 Gene

Start:
109,734,166 bp from pter
End:
109,773,508 bp from pter
Size:
39,343 bases
Orientation:
Minus strand

Genomic View for FAM222A-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM222A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM222A-AS1 Gene

No data available for Regulatory Elements for FAM222A-AS1 Gene

Proteins for FAM222A-AS1 Gene

Post-translational modifications for FAM222A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM222A-AS1 Gene

Domains for FAM222A-AS1 Gene

Gene Families for FAM222A-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FAM222A-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM222A-AS1 Gene

Function for FAM222A-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM222A-AS1 Gene

Localization for FAM222A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM222A-AS1 Gene

Pathways for FAM222A-AS1 Gene

SuperPathways for FAM222A-AS1 Gene

No Data Available

Interacting Proteins for FAM222A-AS1 Gene

Gene Ontology (GO) - Biological Process for FAM222A-AS1 Gene

None

No data available for Pathways by source for FAM222A-AS1 Gene

Transcripts for FAM222A-AS1 Gene

mRNA/cDNA for FAM222A-AS1 Gene

(3) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM222A-AS1 Gene

FAM222A antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM222A-AS1 Gene

No ASD Table

Relevant External Links for FAM222A-AS1 Gene

GeneLoc Exon Structure for
FAM222A-AS1
ECgene alternative splicing isoforms for
FAM222A-AS1

Expression for FAM222A-AS1 Gene

mRNA expression in normal human tissues for FAM222A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FAM222A-AS1 Gene

This gene is overexpressed in Testis (20.4) and Adrenal Gland (4.7).

SOURCE GeneReport for Unigene cluster for FAM222A-AS1 Gene Hs.675961

genes like me logo Genes that share expressions with FAM222A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for FAM222A-AS1 Gene

Orthologs for FAM222A-AS1 Gene

Evolution for FAM222A-AS1 Gene

ENSEMBL:
Gene Tree for FAM222A-AS1 (if available)
TreeFam:
Gene Tree for FAM222A-AS1 (if available)

No data available for Orthologs for FAM222A-AS1 Gene

Paralogs for FAM222A-AS1 Gene

No data available for Paralogs for FAM222A-AS1 Gene

Variants for FAM222A-AS1 Gene

Sequence variations from dbSNP and Humsavar for FAM222A-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs7133196 -- 109,773,065(+) AGGAT(C/T)CTTCT intron-variant
rs7960658 -- 109,772,286(+) TGCCC(A/G)GTCCC intron-variant
rs11296488 -- 109,772,072(+) CACTC(-/G)GGGAG intron-variant
rs11615724 -- 109,771,296(+) CCCAA(C/T)ATCAG intron-variant
rs12310773 -- 109,773,549(+) TCCCA(C/T)CCCCA upstream-variant-2KB

Relevant External Links for FAM222A-AS1 Gene

HapMap Linkage Disequilibrium report
FAM222A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for FAM222A-AS1 Gene

Disorders for FAM222A-AS1 Gene

No disorders were found for FAM222A-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for FAM222A-AS1 Gene

Publications for FAM222A-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for FAM222A-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate FAM222A-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FAM222A-AS1
    • Block miRNA regulation of FAM222A-AS1 using miScript Target Protectors

    Sources for FAM222A-AS1 Gene

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