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Aliases for FAM222A Gene

Aliases for FAM222A Gene

  • Family With Sequence Similarity 222, Member A 2 3
  • C12orf34 3 4
  • Chromosome 12 Open Reading Frame 34 2
  • Uncharacterized Protein C12orf34 3
  • Protein FAM222A 3

External Ids for FAM222A Gene

Previous HGNC Symbols for FAM222A Gene

  • C12orf34

Previous GeneCards Identifiers for FAM222A Gene

  • GC12P110152

Summaries for FAM222A Gene

GeneCards Summary for FAM222A Gene

FAM222A (Family With Sequence Similarity 222, Member A) is a Protein Coding gene. An important paralog of this gene is FAM222B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM222A Gene

Genomics for FAM222A Gene

Genomic Location for FAM222A Gene

Start:
109,714,228 bp from pter
End:
109,770,507 bp from pter
Size:
56,280 bases
Orientation:
Plus strand

Genomic View for FAM222A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM222A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM222A Gene

No data available for Regulatory Elements for FAM222A Gene

Proteins for FAM222A Gene

  • Protein details for FAM222A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5U5X8-F222A_HUMAN
    Recommended name:
    Protein FAM222A
    Protein Accession:
    Q5U5X8
    Secondary Accessions:
    • Q8NCD5
    • Q96SP6

    Protein attributes for FAM222A Gene

    Size:
    452 amino acids
    Molecular mass:
    46792 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC11219.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

neXtProt entry for FAM222A Gene

Proteomics data for FAM222A Gene at MOPED

Post-translational modifications for FAM222A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM222A Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FAM222A Gene

Domains for FAM222A Gene

Protein Domains for FAM222A Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q5U5X8

UniProtKB/Swiss-Prot:

F222A_HUMAN :
  • Q5U5X8
Family:
  • Belongs to the FAM222 family.
genes like me logo Genes that share domains with FAM222A: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for FAM222A Gene

Function for FAM222A Gene

Animal Model Products

CRISPR Products

miRNA for FAM222A Gene

miRTarBase miRNAs that target FAM222A

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FAM222A

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for FAM222A Gene

Localization for FAM222A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM222A Gene

Pathways for FAM222A Gene

SuperPathways for FAM222A Gene

No Data Available

Interacting Proteins for FAM222A Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000351783%0d%0a9606.ENSP00000384625%0d%0a
Selected Interacting proteins: ENSP00000351783 for FAM222A Gene via STRING

Symbol External ID(s) Details
NLK

Gene Ontology (GO) - Biological Process for FAM222A Gene

None

No data available for Pathways by source for FAM222A Gene

Transcripts for FAM222A Gene

mRNA/cDNA for FAM222A Gene

Unigene Clusters for FAM222A Gene

Family with sequence similarity 222, member A:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FAM222A

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM222A Gene

No ASD Table

Relevant External Links for FAM222A Gene

GeneLoc Exon Structure for
FAM222A
ECgene alternative splicing isoforms for
FAM222A

Expression for FAM222A Gene

mRNA expression in normal human tissues for FAM222A Gene

mRNA differential expression in normal tissues according to GTEx for FAM222A Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (5.6).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for FAM222A Gene

SOURCE GeneReport for Unigene cluster for FAM222A Gene Hs.661785

genes like me logo Genes that share expressions with FAM222A: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for FAM222A Gene

Orthologs for FAM222A Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM222A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM222A 35
  • 99.19 (n)
  • 99.12 (a)
FAM222A 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C17H12orf34 35
  • 86.28 (n)
  • 87.83 (a)
FAM222A 36
  • 78 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FAM222A 35
  • 89.03 (n)
  • 91.07 (a)
FAM222A 36
  • 85 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fam222a 35
  • 85.22 (n)
  • 91.13 (a)
Fam222a 16
Fam222a 36
  • 91 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia FAM222A 36
  • 61 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fam222a 35
  • 85.22 (n)
  • 89.36 (a)
chicken
(Gallus gallus)
Aves C12ORF34 35
  • 74.45 (n)
  • 72.51 (a)
FAM222A 36
  • 61 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia fam222a 35
  • 64.35 (n)
  • 64.75 (a)
zebrafish
(Danio rerio)
Actinopterygii fam222a 35
  • 65.22 (n)
  • 63.39 (a)
fam222a 36
  • 47 (a)
OneToMany
FAM222A (1 of 2) 36
  • 40 (a)
OneToMany
Species with no ortholog for FAM222A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM222A Gene

ENSEMBL:
Gene Tree for FAM222A (if available)
TreeFam:
Gene Tree for FAM222A (if available)

Paralogs for FAM222A Gene

Paralogs for FAM222A Gene

genes like me logo Genes that share paralogs with FAM222A: view

Variants for FAM222A Gene

Sequence variations from dbSNP and Humsavar for FAM222A Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs824997 -- 109,717,766(-) ACCTT(A/G)AGAGA intron-variant
rs824998 -- 109,716,353(-) CCCCA(C/T)GCTGC intron-variant
rs824999 -- 109,714,801(-) CCTGA(C/G)GAAGC utr-variant-5-prime
rs825000 -- 109,714,411(-) CCCCG(A/G)GTTCG utr-variant-5-prime
rs825001 -- 109,713,839(-) TGCTC(C/G)GCTCT upstream-variant-2KB

Relevant External Links for FAM222A Gene

HapMap Linkage Disequilibrium report
FAM222A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for FAM222A Gene

Disorders for FAM222A Gene

No disorders were found for FAM222A Gene.

No data available for UniProtKB/Swiss-Prot for FAM222A Gene

Publications for FAM222A Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. The protein interaction landscape of the human CMGC kinase group. (PMID: 23602568) Varjosalo M. … Gstaiger M. (Cell Rep 2013) 3
  5. The finished DNA sequence of human chromosome 12. (PMID: 16541075) Scherer S.E. … Gibbs R.A. (Nature 2006) 4

Products for FAM222A Gene

Sources for FAM222A Gene

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