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Aliases for FAM222A Gene

Aliases for FAM222A Gene

  • Family With Sequence Similarity 222 Member A 2 3 5
  • C12orf34 3 4
  • Family With Sequence Similarity 222, Member A 2
  • Chromosome 12 Open Reading Frame 34 2
  • Protein FAM222A 3

External Ids for FAM222A Gene

Previous HGNC Symbols for FAM222A Gene

  • C12orf34

Previous GeneCards Identifiers for FAM222A Gene

  • GC12P110152

Summaries for FAM222A Gene

GeneCards Summary for FAM222A Gene

FAM222A (Family With Sequence Similarity 222 Member A) is a Protein Coding gene. An important paralog of this gene is FAM222B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM222A Gene

Genomics for FAM222A Gene

Regulatory Elements for FAM222A Gene

Enhancers for FAM222A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F109736 1.2 Ensembl ENCODE 16.2 +25.9 25893 6.5 ATF1 MLX ZFP64 ARID4B FEZF1 DMAP1 ZNF48 GATA2 FOS SP5 FAM222A-AS1 FAM222A FAM216A TRPV4 GC12P109715
GH12F109625 0.9 FANTOM5 ENCODE 14.9 -88.9 -88928 0.4 CTCF PKNOX1 ZNF362 JUND REST FOS FAM222A MMAB MVK RNU4-32P C12orf76 TCHP GC12M109613 GC12M109663 RN7SKP250
GH12F109777 1 Ensembl ENCODE 11.4 +63.5 63535 0.5 DRAP1 ESRRA USF1 MAX THRB ZNF7 TEAD3 ZNF664 SCRT2 NFYB FAM222A TRPV4 FAM222A-AS1 MIR4497
GH12F109737 1 Ensembl ENCODE 10.9 +22.5 22505 0.3 ATF1 SAP130 ARID4B FEZF1 RARA CREM MAFK RFX1 ZNF362 SP5 FAM216A FAM222A FAM222A-AS1 TRPV4 GC12P109715
GH12F109734 0.8 Ensembl ENCODE 10.9 +20.4 20423 0.9 ZNF121 SMARCA4 ZBTB33 REST FOXP2 FAM222A-AS1 FAM222A TRPV4 GC12P109715
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM222A on UCSC Golden Path with GeneCards custom track

Promoters for FAM222A Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000436862 72 1801 PKNOX1 ARNT CREB3L1 ARID4B SIN3A ZNF2 ZNF143 SP3 SP5 NFYC

Genomic Location for FAM222A Gene

Chromosome:
12
Start:
109,714,228 bp from pter
End:
109,770,509 bp from pter
Size:
56,282 bases
Orientation:
Plus strand

Genomic View for FAM222A Gene

Genes around FAM222A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM222A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM222A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM222A Gene

Proteins for FAM222A Gene

  • Protein details for FAM222A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5U5X8-F222A_HUMAN
    Recommended name:
    Protein FAM222A
    Protein Accession:
    Q5U5X8
    Secondary Accessions:
    • Q8NCD5
    • Q96SP6

    Protein attributes for FAM222A Gene

    Size:
    452 amino acids
    Molecular mass:
    46792 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC11219.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

neXtProt entry for FAM222A Gene

Post-translational modifications for FAM222A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM222A Gene

No data available for DME Specific Peptides for FAM222A Gene

Domains & Families for FAM222A Gene

Protein Domains for FAM222A Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q5U5X8

UniProtKB/Swiss-Prot:

F222A_HUMAN :
  • Belongs to the FAM222 family.
Family:
  • Belongs to the FAM222 family.
genes like me logo Genes that share domains with FAM222A: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for FAM222A Gene

Function for FAM222A Gene

Phenotypes for FAM222A Gene

genes like me logo Genes that share phenotypes with FAM222A: view

Animal Model Products

miRNA for FAM222A Gene

miRTarBase miRNAs that target FAM222A

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FAM222A Gene

Localization for FAM222A Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FAM222A gene
Compartment Confidence
mitochondrion 3
nucleus 3
plasma membrane 2
cytosol 2
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM222A Gene

Pathways & Interactions for FAM222A Gene

SuperPathways for FAM222A Gene

No Data Available

Interacting Proteins for FAM222A Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000351783%0d%0a9606.ENSP00000384625%0d%0a
Selected Interacting proteins: ENSP00000351783 Q5U5X8-F222A_HUMAN for FAM222A Gene via STRING IID

Gene Ontology (GO) - Biological Process for FAM222A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM222A Gene

Transcripts for FAM222A Gene

Unigene Clusters for FAM222A Gene

Family with sequence similarity 222, member A:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM222A Gene

No ASD Table

Relevant External Links for FAM222A Gene

GeneLoc Exon Structure for
FAM222A
ECgene alternative splicing isoforms for
FAM222A

Expression for FAM222A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM222A Gene

mRNA differential expression in normal tissues according to GTEx for FAM222A Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x5.6).

Protein differential expression in normal tissues from HIPED for FAM222A Gene

This gene is overexpressed in Bone (42.7) and Fetal testis (26.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FAM222A Gene



Protein tissue co-expression partners for FAM222A Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM222A Gene:

FAM222A

SOURCE GeneReport for Unigene cluster for FAM222A Gene:

Hs.661785
genes like me logo Genes that share expression patterns with FAM222A: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for FAM222A Gene

Orthologs for FAM222A Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM222A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM222A 34 35
  • 99.19 (n)
dog
(Canis familiaris)
Mammalia FAM222A 34 35
  • 89.03 (n)
cow
(Bos Taurus)
Mammalia C17H12orf34 34
  • 86.28 (n)
FAM222A 35
  • 78 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fam222a 34 16 35
  • 85.22 (n)
rat
(Rattus norvegicus)
Mammalia Fam222a 34
  • 85.22 (n)
oppossum
(Monodelphis domestica)
Mammalia FAM222A 35
  • 61 (a)
OneToOne
chicken
(Gallus gallus)
Aves C12ORF34 34
  • 74.45 (n)
FAM222A 35
  • 61 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia fam222a 34
  • 64.35 (n)
zebrafish
(Danio rerio)
Actinopterygii fam222a 34 35
  • 65.22 (n)
FAM222A (1 of 2) 35
  • 40 (a)
OneToMany
Species where no ortholog for FAM222A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM222A Gene

ENSEMBL:
Gene Tree for FAM222A (if available)
TreeFam:
Gene Tree for FAM222A (if available)

Paralogs for FAM222A Gene

Paralogs for FAM222A Gene

genes like me logo Genes that share paralogs with FAM222A: view

Variants for FAM222A Gene

Sequence variations from dbSNP and Humsavar for FAM222A Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs10128839 -- 109,731,239(+) ATGGT(A/G)GTGGC intron-variant
rs10128941 -- 109,731,444(+) AATCC(G/T)CTTCC intron-variant
rs10459145 -- 109,750,573(+) ATAAT(A/G)TAGCA intron-variant
rs10534054 -- 109,745,887(+) GACTA(-/ATCTA)CTTAT intron-variant
rs1056172 -- 109,770,449(+) TCTGC(A/C)CTATA intron-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for FAM222A Gene

Variant ID Type Subtype PubMed ID
nsv560151 CNV loss 21841781
nsv560148 CNV loss 21841781
nsv560147 CNV loss 21841781
nsv560142 CNV gain 21841781
nsv560141 CNV gain+loss 21841781
nsv560133 CNV gain 21841781
nsv560132 CNV gain+loss 21841781
nsv478915 CNV novel sequence insertion 20440878
esv3630725 CNV loss 21293372
esv22410 CNV loss 19812545
dgv2860n54 CNV gain 21841781
dgv2859n54 CNV gain+loss 21841781
dgv2858n54 CNV loss 21841781
dgv2857n54 CNV gain 21841781
dgv2856n54 CNV gain 21841781

Variation tolerance for FAM222A Gene

Residual Variation Intolerance Score: 83.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.81; 47.62% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FAM222A Gene

Human Gene Mutation Database (HGMD)
FAM222A
SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM222A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM222A Gene

Disorders for FAM222A Gene

Relevant External Links for FAM222A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM222A

No disorders were found for FAM222A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM222A Gene

Publications for FAM222A Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  4. The protein interaction landscape of the human CMGC kinase group. (PMID: 23602568) Varjosalo M. … Gstaiger M. (Cell Rep 2013) 3 64
  5. The finished DNA sequence of human chromosome 12. (PMID: 16541075) Scherer S.E. … Gibbs R.A. (Nature 2006) 4 64

Products for FAM222A Gene

Sources for FAM222A Gene

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