Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FAM220CP Gene

Aliases for FAM220CP Gene

  • Family With Sequence Similarity 220 Member C, Pseudogene 2 5
  • Family With Sequence Similarity 220, Member C, Pseudogene 2
  • Putative SIPAR-Like Protein C9orf51-Like 3

External Ids for FAM220CP Gene

Previous GeneCards Identifiers for FAM220CP Gene

  • GC09P099885

Summaries for FAM220CP Gene

GeneCards Summary for FAM220CP Gene

FAM220CP (Family With Sequence Similarity 220 Member C, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM220CP Gene

Genomics for FAM220CP Gene

Regulatory Elements for FAM220CP Gene

Enhancers for FAM220CP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F097404 1 ENCODE 5.7 +285.7 285668 3.3 PKNOX1 ATF1 MLX ARID4B DMAP1 YY1 ZHX2 PPARG PPARGC1A KAT8 ENSG00000203279 FAM220CP VN1R51P LOC286359 TDRD7
GH09F097411 1.1 ENCODE 4.6 +292.1 292145 2.3 ARID4B SIN3A DMAP1 ZNF2 ZNF207 ZNF143 KLF13 ZNF263 MXD4 REST ZNF782 NCBP1 ZNF322P1 FAM220CP CCDC180 TDRD7 TMOD1
GH09F097109 0.7 ENCODE 0.4 -11.0 -10959 0.3 SOX13 SOX5 CTCF ZNF654 PKNOX1 TRIM22 REST RAD21 ZGPAT SMC3 GAS2L1P2 FAM220CP VN1R51P
GH09F097110 0.6 ENCODE 0.4 -9.5 -9470 1.0 FOSL1 FOS NFE2 MAFK NFE2L2 FAM220CP VN1R51P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM220CP on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM220CP Gene

Chromosome:
9
Start:
97,120,401 bp from pter
End:
97,123,015 bp from pter
Size:
2,615 bases
Orientation:
Plus strand

Genomic View for FAM220CP Gene

Genes around FAM220CP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM220CP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM220CP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM220CP Gene

Proteins for FAM220CP Gene

Post-translational modifications for FAM220CP Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM220CP Gene

Domains & Families for FAM220CP Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM220CP Gene

Function for FAM220CP Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM220CP Gene

Localization for FAM220CP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM220CP Gene

Pathways & Interactions for FAM220CP Gene

SuperPathways for FAM220CP Gene

No Data Available

Interacting Proteins for FAM220CP Gene

Gene Ontology (GO) - Biological Process for FAM220CP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM220CP Gene

Transcripts for FAM220CP Gene

mRNA/cDNA for FAM220CP Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM220CP Gene

No ASD Table

Relevant External Links for FAM220CP Gene

GeneLoc Exon Structure for
FAM220CP
ECgene alternative splicing isoforms for
FAM220CP

Expression for FAM220CP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM220CP Gene

mRNA differential expression in normal tissues according to GTEx for FAM220CP Gene

This gene is overexpressed in Testis (x12.8) and Kidney - Cortex (x7.8).

NURSA nuclear receptor signaling pathways regulating expression of FAM220CP Gene:

FAM220CP
genes like me logo Genes that share expression patterns with FAM220CP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FAM220CP Gene

Orthologs for FAM220CP Gene

Evolution for FAM220CP Gene

ENSEMBL:
Gene Tree for FAM220CP (if available)
TreeFam:
Gene Tree for FAM220CP (if available)

No data available for Orthologs for FAM220CP Gene

Paralogs for FAM220CP Gene

No data available for Paralogs for FAM220CP Gene

Variants for FAM220CP Gene

Relevant External Links for FAM220CP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM220CP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FAM220CP Gene

Disorders for FAM220CP Gene

No disorders were found for FAM220CP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for FAM220CP Gene

Publications for FAM220CP Gene

No publications were found for FAM220CP Gene.

Products for FAM220CP Gene

Sources for FAM220CP Gene

Content
Loading form....