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Aliases for FAM220BP Gene

Aliases for FAM220BP Gene

  • Family With Sequence Similarity 220, Member B, Pseudogene 2
  • C9orf51 3 4
  • Putative SIPAR-Like Protein C9orf51 3
  • Chromosome 9 Open Reading Frame 51 2
  • Protein FAM220B Pseudogene 4

External Ids for FAM220BP Gene

Previous HGNC Symbols for FAM220BP Gene

  • C9orf51

Summaries for FAM220BP Gene

GeneCards Summary for FAM220BP Gene

FAM220BP (Family With Sequence Similarity 220, Member B, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM220BP Gene

Genomics for FAM220BP Gene

Genomic Location for FAM220BP Gene

Chromosome:
9
Start:
38,526,662 bp from pter
End:
38,528,814 bp from pter
Size:
2,153 bases
Orientation:
Plus strand

Genomic View for FAM220BP Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for FAM220BP Gene

No data available for Regulatory Elements for FAM220BP Gene

Proteins for FAM220BP Gene

  • Protein details for FAM220BP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    B1ANY3-F220P_HUMAN
    Recommended name:
    Putative protein FAM220BP
    Protein Accession:
    B1ANY3

    Protein attributes for FAM220BP Gene

    Size:
    271 amino acids
    Molecular mass:
    29405 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM220BP Gene

Proteomics data for FAM220BP Gene at MOPED

Post-translational modifications for FAM220BP Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM220BP Gene

Domains & Families for FAM220BP Gene

Protein Domains for FAM220BP Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM220BP Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FAM220BP: view

No data available for Gene Families and UniProtKB/Swiss-Prot for FAM220BP Gene

Function for FAM220BP Gene

Phenotypes for FAM220BP Gene

GenomeRNAi human phenotypes for FAM220BP:
genes like me logo Genes that share phenotypes with FAM220BP: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM220BP Gene

Localization for FAM220BP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM220BP Gene

Pathways & Interactions for FAM220BP Gene

SuperPathways for FAM220BP Gene

No Data Available

Interacting Proteins for FAM220BP Gene

Gene Ontology (GO) - Biological Process for FAM220BP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM220BP Gene

Drugs & Compounds for FAM220BP Gene

No Compound Related Data Available

Transcripts for FAM220BP Gene

mRNA/cDNA for FAM220BP Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM220BP Gene

No ASD Table

Relevant External Links for FAM220BP Gene

GeneLoc Exon Structure for
FAM220BP
ECgene alternative splicing isoforms for
FAM220BP

Expression for FAM220BP Gene

mRNA expression in normal human tissues for FAM220BP Gene

mRNA differential expression in normal tissues according to GTEx for FAM220BP Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x13.6), Brain - Putamen (basal ganglia) (x10.4), Brain - Caudate (basal ganglia) (x7.8), and Testis (x6.7).

Protein differential expression in normal tissues from HIPED for FAM220BP Gene

This gene is overexpressed in Blymphocyte (47.5) and Neutrophil (21.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FAM220BP Gene



genes like me logo Genes that share expression patterns with FAM220BP: view

Protein tissue co-expression partners for FAM220BP Gene

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for FAM220BP Gene

Orthologs for FAM220BP Gene

Evolution for FAM220BP Gene

ENSEMBL:
Gene Tree for FAM220BP (if available)
TreeFam:
Gene Tree for FAM220BP (if available)

No data available for Orthologs for FAM220BP Gene

Paralogs for FAM220BP Gene

(2) SIMAP similar genes for FAM220BP Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM220BP: view

No data available for Paralogs for FAM220BP Gene

Variants for FAM220BP Gene

Sequence variations from dbSNP and Humsavar for FAM220BP Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
VAR_050820 -
VAR_050821 -
VAR_050822 -

Relevant External Links for FAM220BP Gene

HapMap Linkage Disequilibrium report
FAM220BP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FAM220BP Gene

Disorders for FAM220BP Gene

genes like me logo Genes that share disorders with FAM220BP: view

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for FAM220BP Gene

Publications for FAM220BP Gene

  1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 67

Products for FAM220BP Gene

Sources for FAM220BP Gene

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