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Aliases for FAM220BP Gene

Aliases for FAM220BP Gene

  • Family With Sequence Similarity 220, Member B, Pseudogene 2
  • C9orf51 3 4
  • Putative SIPAR-Like Protein C9orf51 3
  • Chromosome 9 Open Reading Frame 51 2
  • Protein FAM220B Pseudogene 4

External Ids for FAM220BP Gene

Previous HGNC Symbols for FAM220BP Gene

  • C9orf51

Summaries for FAM220BP Gene

GeneCards Summary for FAM220BP Gene

FAM220BP (Family With Sequence Similarity 220, Member B, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM220BP Gene

Genomics for FAM220BP Gene

Genomic Location for FAM220BP Gene

Start:
38,526,952 bp from pter
End:
38,527,912 bp from pter
Size:
961 bases
Orientation:
Plus strand

Genomic View for FAM220BP Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM220BP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM220BP Gene

No data available for Regulatory Elements for FAM220BP Gene

Proteins for FAM220BP Gene

  • Protein details for FAM220BP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    B1ANY3-F220P_HUMAN
    Recommended name:
    Putative protein FAM220BP
    Protein Accession:
    B1ANY3
    Secondary Accessions:

    Protein attributes for FAM220BP Gene

    Size:
    271 amino acids
    Molecular mass:
    29405 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM220BP Gene

Proteomics data for FAM220BP Gene at MOPED

Post-translational modifications for FAM220BP Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM220BP Gene

Domains for FAM220BP Gene

Protein Domains for FAM220BP Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FAM220BP: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM220BP Gene

Function for FAM220BP Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM220BP Gene

Localization for FAM220BP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM220BP Gene

Pathways for FAM220BP Gene

SuperPathways for FAM220BP Gene

No Data Available

Interacting Proteins for FAM220BP Gene

Gene Ontology (GO) - Biological Process for FAM220BP Gene

None

No data available for Pathways by source for FAM220BP Gene

Transcripts for FAM220BP Gene

mRNA/cDNA for FAM220BP Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FAM220BP

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM220BP Gene

No ASD Table

Relevant External Links for FAM220BP Gene

GeneLoc Exon Structure for
FAM220BP
ECgene alternative splicing isoforms for
FAM220BP

Expression for FAM220BP Gene

mRNA expression in normal human tissues for FAM220BP Gene

mRNA differential expression in normal tissues according to GTEx for FAM220BP Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (13.6), Brain - Putamen (basal ganglia) (10.4), Brain - Caudate (basal ganglia) (7.8), and Testis (6.7).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for FAM220BP Gene

genes like me logo Genes that share expressions with FAM220BP: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for FAM220BP Gene

Orthologs for FAM220BP Gene

Evolution for FAM220BP Gene

ENSEMBL:
Gene Tree for FAM220BP (if available)
TreeFam:
Gene Tree for FAM220BP (if available)

No data available for Orthologs for FAM220BP Gene

Paralogs for FAM220BP Gene

Selected SIMAP similar genes for FAM220BP Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM220BP: view

No data available for Paralogs for FAM220BP Gene

Variants for FAM220BP Gene

Sequence variations from dbSNP and Humsavar for FAM220BP Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs1832322 - 38,527,580(+) GTTTT(C/T)GGGAT nc-transcript-variant
rs1832323 - 38,527,693(+) CTGAA(A/T)GATGA nc-transcript-variant
rs2993158 -- 38,527,544(-) GCGTG(G/T)CAGTC nc-transcript-variant
rs2993159 -- 38,527,120(-) GTGCC(A/G)AGGGG nc-transcript-variant
rs2993160 -- 38,525,133(-) ccacg(C/G)gtggc upstream-variant-2KB

Relevant External Links for FAM220BP Gene

HapMap Linkage Disequilibrium report
FAM220BP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for FAM220BP Gene

Disorders for FAM220BP Gene

No disorders were found for FAM220BP Gene.

No data available for UniProtKB/Swiss-Prot for FAM220BP Gene

Publications for FAM220BP Gene

  1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4

Products for FAM220BP Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate FAM220BP
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FAM220BP
    • Block miRNA regulation of FAM220BP using miScript Target Protectors

    Sources for FAM220BP Gene

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