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Aliases for FAM216B Gene

Aliases for FAM216B Gene

  • Family With Sequence Similarity 216, Member B 2 3
  • C13orf30 3 4
  • Chromosome 13 Open Reading Frame 30 2
  • Protein FAM216B 3

External Ids for FAM216B Gene

Previous Symbols for FAM216B Gene

  • C13orf30

Summaries for FAM216B Gene

GeneCards Summary for FAM216B Gene

FAM216B (Family With Sequence Similarity 216, Member B) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM216B Gene

Genomics for FAM216B Gene

Genomic Location for FAM216B Gene

Start:
42,781,550 bp from pter
End:
42,791,549 bp from pter
Size:
10,000 bases
Orientation:
Plus strand

Genomic View for FAM216B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM216B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM216B Gene

No data available for Regulatory Elements for FAM216B Gene

Proteins for FAM216B Gene

  • Protein details for FAM216B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N7L0-F216B_HUMAN
    Recommended name:
    Protein FAM216B
    Protein Accession:
    Q8N7L0
    Secondary Accessions:
    • B1ALI3

    Protein attributes for FAM216B Gene

    Size:
    139 amino acids
    Molecular mass:
    16362 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM216B Gene

Proteomics data for FAM216B Gene at MOPED

Post-translational modifications for FAM216B Gene

No Post-translational modifications

Other Protein References for FAM216B Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FAM216B Gene

Domains for FAM216B Gene

Protein Domains for FAM216B Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q8N7L0

UniProtKB/Swiss-Prot:

F216B_HUMAN
Family:
  • Belongs to the FAM216 family.:
    • Q8N7L0
genes like me logo Genes that share domains with FAM216B: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for FAM216B Gene

Function for FAM216B Gene

Phenotypes for FAM216B Gene

genes like me logo Genes that share phenotypes with FAM216B: view

miRNA for FAM216B Gene

miRTarBase miRNAs that target FAM216B

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for FAM216B Gene

Localization for FAM216B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM216B Gene

Pathways for FAM216B Gene

SuperPathways for FAM216B Gene

No Data Available

Interacting Proteins for FAM216B Gene

Gene Ontology (GO) - Biological Process for FAM216B Gene

None

No data available for Pathways by source for FAM216B Gene

Transcripts for FAM216B Gene

mRNA/cDNA for FAM216B Gene

(2) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(15) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM216B Gene

Family with sequence similarity 216, member B:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM216B Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b
SP1:
SP2:

Relevant External Links for FAM216B Gene

GeneLoc Exon Structure for
FAM216B
ECgene alternative splicing isoforms for
FAM216B

Expression for FAM216B Gene

mRNA expression in normal human tissues for FAM216B Gene

mRNA differential expression in normal tissues according to GTEx for FAM216B Gene

This gene is overexpressed in Heart - Atrial Appendage (15.8), Cervix - Endocervix (6.2), Fallopian Tube (5.6), Brain - Hypothalamus (5.0), Brain - Caudate (basal ganglia) (4.7), and Lung (4.5).

SOURCE GeneReport for Unigene cluster for FAM216B Gene Hs.16970

genes like me logo Genes that share expressions with FAM216B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for FAM216B Gene

Orthologs for FAM216B Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM216B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM216B 35
  • 100 (n)
  • 100 (a)
FAM216B 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FAM216B 35
  • 80.34 (n)
  • 68.35 (a)
FAM216B 36
  • 65 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FAM216B 35
  • 82.49 (n)
  • 74.1 (a)
FAM216B 36
  • 75 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fam216b 35
  • 73.9 (n)
  • 68.87 (a)
Fam216b 16
Fam216b 36
  • 54 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FAM216B 36
  • 21 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fam216b 35
  • 74.1 (n)
  • 63.64 (a)
lizard
(Anolis carolinensis)
Reptilia FAM216B 36
  • 38 (a)
OneToOne
Species with no ortholog for FAM216B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FAM216B Gene

ENSEMBL:
Gene Tree for FAM216B (if available)
TreeFam:
Gene Tree for FAM216B (if available)

Paralogs for FAM216B Gene

No data available for Paralogs for FAM216B Gene

Variants for FAM216B Gene

Sequence variations from dbSNP and Humsavar for FAM216B Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type MAF
rs1323611 -- 42,779,923(-) GGAGG(A/C)TGAAG upstream-variant-2KB
rs1324422 -- 42,784,040(+) GCTTT(A/G)TTGTT intron-variant
rs1324427 -- 42,787,864(+) CACCT(C/G)TATGT intron-variant
rs1535689 -- 42,785,230(-) TACTT(C/T)ATAAT intron-variant
rs1535887 -- 42,783,036(+) tcagc(A/G)tggtg intron-variant

Relevant External Links for FAM216B Gene

HapMap Linkage Disequilibrium report
FAM216B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for FAM216B Gene

Disorders for FAM216B Gene

No disorders were found for FAM216B Gene.

No data available for UniProtKB/Swiss-Prot for FAM216B Gene

Publications for FAM216B Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. The DNA sequence and analysis of human chromosome 13. (PMID: 15057823) Dunham A. … Ross M.T. (Nature 2004) 4
  5. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3

Products for FAM216B Gene

  • antibodies-online proteins for FAM216B
  • antibodies-online antibodies for FAM216B
  • antibodies-online kits for FAM216B

Sources for FAM216B Gene

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