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Aliases for FAM216A Gene

Aliases for FAM216A Gene

  • Family With Sequence Similarity 216 Member A 2 3 5
  • C12orf24 3 4
  • Family With Sequence Similarity 216, Member A 2
  • Chromosome 12 Open Reading Frame 24 2
  • Protein Predicted By Clone 23733 3
  • Uncharacterized Protein C12orf24 3
  • Protein FAM216A 3
  • HSU79274 3

External Ids for FAM216A Gene

Previous HGNC Symbols for FAM216A Gene

  • C12orf24

Previous GeneCards Identifiers for FAM216A Gene

  • GC12P110907

Summaries for FAM216A Gene

GeneCards Summary for FAM216A Gene

FAM216A (Family With Sequence Similarity 216 Member A) is a Protein Coding gene.

Additional gene information for FAM216A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM216A Gene

Genomics for FAM216A Gene

Regulatory Elements for FAM216A Gene

Enhancers for FAM216A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H110574 1.9 FANTOM5 Ensembl ENCODE dbSUPER 22.7 +108.8 108813 6 HDGF PKNOX1 FOXA2 MLX ARID4B DMAP1 YBX1 YY1 ZNF766 ZNF207 FAM216A GPN3 ARPC3 TCTN1 GLTP PPTC7 ATP2A2 VPS29
GH12H109997 1.4 ENCODE dbSUPER 20.5 -466.4 -466431 9 HDGF FOXA2 PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B RNU4-32P FAM216A ARPC3 ANKRD13A GLTP GIT2 C12orf76 ENSG00000277595
GH12H109475 1.4 ENCODE dbSUPER 20.5 -991.3 -991323 2 PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 SLC30A9 ZNF302 KCTD10 IFT81 ALKBH2 UBE3B SART3 FAM216A USP30 LINC01486 ARPC3 CORO1C
GH12H110499 1.2 ENCODE 23.5 +32.7 32675 3 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MEF2D ZNF610 IFT81 ARPC3 FAM216A ANAPC7 ENSG00000257268 GPN3 ANKRD13A TCHP ENSG00000202335 ENSG00000278993
GH12H110580 1.6 FANTOM5 ENCODE dbSUPER 12.4 +115.2 115207 5 HDGF PKNOX1 ARNT ARID4B SIN3A ZNF2 YY1 ZNF766 ZNF207 ZNF143 MYL2 FAM216A ATP2A2 GPN3 PPTC7 GLTP ARPC3 TCTN1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM216A on UCSC Golden Path with GeneCards custom track

Promoters for FAM216A Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000057328 236 2401 HDGF FOXA2 PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 YBX1 ZNF2

Genomic Location for FAM216A Gene

Chromosome:
12
Start:
110,468,364 bp from pter
End:
110,490,387 bp from pter
Size:
22,024 bases
Orientation:
Plus strand

Genomic View for FAM216A Gene

Genes around FAM216A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM216A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM216A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM216A Gene

Proteins for FAM216A Gene

  • Protein details for FAM216A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WUB2-F216A_HUMAN
    Recommended name:
    Protein FAM216A
    Protein Accession:
    Q8WUB2
    Secondary Accessions:
    • A6NH30
    • Q99776

    Protein attributes for FAM216A Gene

    Size:
    273 amino acids
    Molecular mass:
    30792 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM216A Gene

Post-translational modifications for FAM216A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM216A Gene

No data available for DME Specific Peptides for FAM216A Gene

Domains & Families for FAM216A Gene

Gene Families for FAM216A Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for FAM216A Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM216A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8WUB2

UniProtKB/Swiss-Prot:

F216A_HUMAN :
  • Belongs to the FAM216 family.
Family:
  • Belongs to the FAM216 family.
genes like me logo Genes that share domains with FAM216A: view

Function for FAM216A Gene

Phenotypes From GWAS Catalog for FAM216A Gene

genes like me logo Genes that share phenotypes with FAM216A: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for FAM216A
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FAM216A Gene

Localization for FAM216A Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FAM216A gene
Compartment Confidence
nucleus 4
cytoskeleton 2
mitochondrion 2
cytosol 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Actin filaments (2)
See all subcellular structures

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM216A Gene

Pathways & Interactions for FAM216A Gene

SuperPathways for FAM216A Gene

No Data Available

Interacting Proteins for FAM216A Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000366901%0d%0a9606.ENSP00000244096%0d%0a
Selected Interacting proteins: Q8WUB2-F216A_HUMAN ENSP00000366901 for FAM216A Gene via IID STRING

Gene Ontology (GO) - Biological Process for FAM216A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM216A Gene

Drugs & Compounds for FAM216A Gene

No Compound Related Data Available

Transcripts for FAM216A Gene

Unigene Clusters for FAM216A Gene

Family with sequence similarity 216, member A:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for FAM216A
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for FAM216A Gene

No ASD Table

Relevant External Links for FAM216A Gene

GeneLoc Exon Structure for
FAM216A
ECgene alternative splicing isoforms for
FAM216A

Expression for FAM216A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM216A Gene

Protein differential expression in normal tissues from HIPED for FAM216A Gene

This gene is overexpressed in Testis (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FAM216A Gene



Protein tissue co-expression partners for FAM216A Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of FAM216A Gene:

FAM216A

SOURCE GeneReport for Unigene cluster for FAM216A Gene:

Hs.436618
genes like me logo Genes that share expression patterns with FAM216A: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM216A Gene

Orthologs for FAM216A Gene

This gene was present in the common ancestor of mammals.

Orthologs for FAM216A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM216A 33 34
  • 99.22 (n)
dog
(Canis familiaris)
Mammalia FAM216A 33 34
  • 87.66 (n)
cow
(Bos Taurus)
Mammalia FAM216A 33 34
  • 87.12 (n)
mouse
(Mus musculus)
Mammalia Fam216a 33 16 34
  • 79.97 (n)
rat
(Rattus norvegicus)
Mammalia Fam216a 33
  • 79.22 (n)
oppossum
(Monodelphis domestica)
Mammalia FAM216A 34
  • 64 (a)
OneToOne
Species where no ortholog for FAM216A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FAM216A Gene

ENSEMBL:
Gene Tree for FAM216A (if available)
TreeFam:
Gene Tree for FAM216A (if available)

Paralogs for FAM216A Gene

No data available for Paralogs for FAM216A Gene

Variants for FAM216A Gene

Sequence variations from dbSNP and Humsavar for FAM216A Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000053240 -- 110,484,620(+) TATTT(A/G)TTTAC intron-variant
rs1000234468 -- 110,467,687(+) ACCAC(C/G)TACCA intron-variant, upstream-variant-2KB
rs1000313952 -- 110,478,503(+) CAAGG(C/T)AGAGG intron-variant
rs1000350321 -- 110,467,907(+) ACAGG(-/GTT)GTTGT intron-variant, upstream-variant-2KB
rs1000513795 -- 110,489,501(+) TGAAG(G/T)AGGGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM216A Gene

Variant ID Type Subtype PubMed ID
esv3630734 CNV loss 21293372
nsv1113519 CNV deletion 24896259

Variation tolerance for FAM216A Gene

Residual Variation Intolerance Score: 60.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.61; 30.89% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FAM216A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM216A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM216A Gene

Disorders for FAM216A Gene

Relevant External Links for FAM216A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM216A

No disorders were found for FAM216A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM216A Gene

Publications for FAM216A Gene

  1. Large-scale concatenation cDNA sequencing. (PMID: 9110174) Yu W … Gibbs RA (Genome research 1997) 3 4 60
  2. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 60
  3. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein MY … Mann M (Cell 2015) 3 60
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin EL … Gygi SP (Cell 2015) 3 60
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60

Products for FAM216A Gene

Sources for FAM216A Gene

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