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Aliases for FAM215A Gene

Subcategory (RNA class) for FAM215A Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM215A Gene

  • Family With Sequence Similarity 215, Member A (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 530 2 3
  • C17orf88 3 4
  • APR-2 3 4
  • Chromosome 17 Open Reading Frame 88 2
  • Apoptosis-Related Protein 2 4
  • Apoptosis Related Protein 3
  • LINC00530 3
  • APR2 4

External Ids for FAM215A Gene

Previous Symbols for FAM215A Gene

  • C17orf88

Summaries for FAM215A Gene

GeneCards Summary for FAM215A Gene

FAM215A (Family With Sequence Similarity 215, Member A (Non-Protein Coding)) is a RNA Gene, and belongs to non-coding RNA RNA class. Diseases associated with FAM215A include chronic lymphocytic leukemia and primary biliary cirrhosis.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM215A Gene

Genomics for FAM215A Gene

Genomic Location for FAM215A Gene

Start:
43,917,208 bp from pter
End:
43,917,987 bp from pter
Size:
780 bases
Orientation:
Plus strand

Genomic View for FAM215A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM215A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM215A Gene

No data available for Regulatory Elements for FAM215A Gene

Proteins for FAM215A Gene

  • Protein details for FAM215A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y5M1-F215A_HUMAN
    Recommended name:
    Uncharacterized protein FAM215A
    Protein Accession:
    Q9Y5M1
    Secondary Accessions:
    • Q6NTD6

    Protein attributes for FAM215A Gene

    Size:
    114 amino acids
    Molecular mass:
    11973 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM215A Gene

Proteomics data for FAM215A Gene at MOPED

Post-translational modifications for FAM215A Gene

No Post-translational modifications

Other Protein References for FAM215A Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for FAM215A Gene

Domains for FAM215A Gene

Gene Families for FAM215A Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for FAM215A Gene

ProtoNet:
genes like me logo Genes that share domains with FAM215A: view

No data available for UniProtKB/Swiss-Prot for FAM215A Gene

Function for FAM215A Gene

Gene Ontology (GO) - Molecular Function for FAM215A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with FAM215A: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM215A Gene

Localization for FAM215A Gene

Gene Ontology (GO) - Cellular Components for FAM215A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
genes like me logo Genes that share ontologies with FAM215A: view

Pathways for FAM215A Gene

SuperPathways for FAM215A Gene

No Data Available

Interacting Proteins for FAM215A Gene

Gene Ontology (GO) - Biological Process for FAM215A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with FAM215A: view

No data available for Pathways by source for FAM215A Gene

Compounds for FAM215A Gene

(3) Novoseek inferred chemical compound relationships for FAM215A Gene

Compound -log(P) Hits PubMed IDs
arsenite 46.8 1
nitric oxide 1.8 3
oxygen 0 2
genes like me logo Genes that share compounds with FAM215A: view

Transcripts for FAM215A Gene

mRNA/cDNA for FAM215A Gene

(3) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM215A Gene

Family with sequence similarity 215, member A (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM215A Gene

No ASD Table

Relevant External Links for FAM215A Gene

GeneLoc Exon Structure for
FAM215A
ECgene alternative splicing isoforms for
FAM215A

Expression for FAM215A Gene

mRNA expression in normal human tissues for FAM215A Gene

mRNA differential expression in normal tissues according to GTEx for FAM215A Gene

This gene is overexpressed in Testis (16.0).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for FAM215A Gene

SOURCE GeneReport for Unigene cluster for FAM215A Gene Hs.721804

genes like me logo Genes that share expressions with FAM215A: view

Orthologs for FAM215A Gene

Evolution for FAM215A Gene

ENSEMBL:
Gene Tree for FAM215A (if available)
TreeFam:
Gene Tree for FAM215A (if available)

No data available for Orthologs for FAM215A Gene

Paralogs for FAM215A Gene

No data available for Paralogs for FAM215A Gene

Variants for FAM215A Gene

Sequence variations from dbSNP and Humsavar for FAM215A Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs231458 -- 43,917,426(-) CCGGC(A/G)TAGGC nc-transcript-variant
rs1035281 -- 43,916,752(-) gtgga(C/G)gactt upstream-variant-2KB
rs1035282 -- 43,916,728(-) agatc(C/G)aaaga upstream-variant-2KB
rs1035283 -- 43,916,686(-) aatta(C/T)tgtct upstream-variant-2KB
rs1035284 -- 43,916,513(-) aaaag(C/G)aggga upstream-variant-2KB

Relevant External Links for FAM215A Gene

HapMap Linkage Disequilibrium report
FAM215A

No data available for Structural Variations from Database of Genomic Variants (DGV) for FAM215A Gene

Disorders for FAM215A Gene

(15) Novoseek inferred disease relationships for FAM215A Gene

Disease -log(P) Hits PubMed IDs
carcinoma squamous cell 35.2 2
down syndrome 29.4 2
tumors 26.7 1
cancer 26.7 2
nsclc 24.1 3
genes like me logo Genes that share disorders with FAM215A: view

No data available for UniProtKB/Swiss-Prot for FAM215A Gene

Publications for FAM215A Gene

  1. Improved PCR-based subtractive hybridization strategy for cloning differentially expressed genes. (PMID: 10948432) Zhu F. … Wang C.J. (BioTechniques 2000) 2 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody M.C. … Nusbaum C. (Nature 2006) 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for FAM215A Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate FAM215A
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FAM215A
    • Block miRNA regulation of FAM215A using miScript Target Protectors

    Sources for FAM215A Gene

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