Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FAM212B-AS1 Gene

Subcategory (RNA class) for FAM212B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM212B-AS1 Gene

  • FAM212B Antisense RNA 1 2 3 5

External Ids for FAM212B-AS1 Gene

Previous GeneCards Identifiers for FAM212B-AS1 Gene

  • GC01P112285

Summaries for FAM212B-AS1 Gene

GeneCards Summary for FAM212B-AS1 Gene

FAM212B-AS1 (FAM212B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM212B-AS1 Gene

Genomics for FAM212B-AS1 Gene

Regulatory Elements for FAM212B-AS1 Gene

Enhancers for FAM212B-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G111731 1.9 FANTOM5 Ensembl ENCODE dbSUPER 25.4 -3.5 -3461 9.1 PKNOX1 FOXA2 MLX CREB3L1 ARNT ZFP64 ARID4B FEZF1 DMAP1 ZNF2 FAM212B-AS1 DDX20 RAP1A FAM212B C1orf162 GC01M111722
GH01G111748 1.5 Ensembl ENCODE dbSUPER 5.8 +7.6 7630 0.3 ATF1 ARNT ARID4B ZNF2 ZBTB7B CBX5 GATA2 ZNF143 DEK ZNF263 DDX20 FAM212B-AS1
GH01G111745 1.3 Ensembl ENCODE dbSUPER 6 +6.5 6499 1.7 ELF3 CTCF KLF1 ATF1 SAP130 NFIB ARID4B CEBPG ZBTB40 ZNF2 DDX20 FAM212B-AS1
GH01G111754 1.2 ENCODE 5.9 +16.0 15960 2.7 MLX CREB3L1 AGO1 ZFP64 DMAP1 YY1 ZNF143 SP3 TBX21 MEF2D DDX20 FAM212B-AS1 FAM212B LOC101928718
GH01G111718 1.4 Ensembl ENCODE dbSUPER 4.7 -19.3 -19337 3.4 PKNOX1 ZSCAN4 GATA2 SCRT2 FOS ZNF398 NR2F2 SMARCA4 CEBPA IKZF1 RAP1A DDX20 FAM212B ENSG00000273483 OVGP1 FAM212B-AS1 LINC01160 GC01M111722 GC01P111714
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM212B-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for FAM212B-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000011418 -341 2601 PKNOX1 FOXA2 MLX CREB3L1 ARNT ZFP64 ARID4B DMAP1 ZNF2 SLC30A9

Genomic Location for FAM212B-AS1 Gene

Chromosome:
1
Start:
111,739,841 bp from pter
End:
111,747,798 bp from pter
Size:
7,958 bases
Orientation:
Plus strand

Genomic View for FAM212B-AS1 Gene

Genes around FAM212B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM212B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM212B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM212B-AS1 Gene

Proteins for FAM212B-AS1 Gene

Post-translational modifications for FAM212B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM212B-AS1 Gene

Domains & Families for FAM212B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM212B-AS1 Gene

Function for FAM212B-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM212B-AS1 Gene

Localization for FAM212B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM212B-AS1 Gene

Pathways & Interactions for FAM212B-AS1 Gene

SuperPathways for FAM212B-AS1 Gene

No Data Available

Interacting Proteins for FAM212B-AS1 Gene

Gene Ontology (GO) - Biological Process for FAM212B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM212B-AS1 Gene

Drugs & Compounds for FAM212B-AS1 Gene

No Compound Related Data Available

Transcripts for FAM212B-AS1 Gene

mRNA/cDNA for FAM212B-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM212B-AS1 Gene

No ASD Table

Relevant External Links for FAM212B-AS1 Gene

GeneLoc Exon Structure for
FAM212B-AS1
ECgene alternative splicing isoforms for
FAM212B-AS1

Expression for FAM212B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM212B-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FAM212B-AS1 Gene

This gene is overexpressed in Heart - Atrial Appendage (x5.8) and Heart - Left Ventricle (x4.9).
genes like me logo Genes that share expression patterns with FAM212B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM212B-AS1 Gene

Orthologs for FAM212B-AS1 Gene

Evolution for FAM212B-AS1 Gene

ENSEMBL:
Gene Tree for FAM212B-AS1 (if available)
TreeFam:
Gene Tree for FAM212B-AS1 (if available)

No data available for Orthologs for FAM212B-AS1 Gene

Paralogs for FAM212B-AS1 Gene

No data available for Paralogs for FAM212B-AS1 Gene

Variants for FAM212B-AS1 Gene

Sequence variations from dbSNP and Humsavar for FAM212B-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000483665 -- 111,744,888(+) TCTTT(A/G)TAAAG intron-variant, downstream-variant-500B
rs1000523064 -- 111,741,929(+) CAGGC(-/T)GGTCT intron-variant
rs1000753087 -- 111,745,163(+) GCAAA(G/T)ATCTC intron-variant, downstream-variant-500B
rs1000915413 -- 111,740,339(+) ATGGA(G/T)TTGCG intron-variant, upstream-variant-2KB
rs1001153886 -- 111,742,024(+) TGAAA(C/T)AGTCT intron-variant

Relevant External Links for FAM212B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM212B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FAM212B-AS1 Gene

Disorders for FAM212B-AS1 Gene

Relevant External Links for FAM212B-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM212B-AS1

No disorders were found for FAM212B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM212B-AS1 Gene

Publications for FAM212B-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for FAM212B-AS1 Gene

Sources for FAM212B-AS1 Gene

Content
Loading form....