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Aliases for FAM212A Gene

Aliases for FAM212A Gene

  • Family With Sequence Similarity 212, Member A 2 3
  • C3orf54 3 4
  • Chromosome 3 Open Reading Frame 54 2
  • Protein FAM212A 3
  • INKA1 3

External Ids for FAM212A Gene

Previous Symbols for FAM212A Gene

  • C3orf54

Summaries for FAM212A Gene

GeneCards Summary for FAM212A Gene

FAM212A (Family With Sequence Similarity 212, Member A) is a Protein Coding gene. An important paralog of this gene is FAM212B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM212A Gene

Genomics for FAM212A Gene

Genomic Location for FAM212A Gene

Start:
49,803,236 bp from pter
End:
49,805,033 bp from pter
Size:
1,798 bases
Orientation:
Plus strand

Genomic View for FAM212A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM212A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM212A Gene

No data available for Regulatory Elements for FAM212A Gene

Proteins for FAM212A Gene

  • Protein details for FAM212A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96EL1-F212A_HUMAN
    Recommended name:
    Protein FAM212A
    Protein Accession:
    Q96EL1
    Secondary Accessions:

    Protein attributes for FAM212A Gene

    Size:
    285 amino acids
    Molecular mass:
    31328 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH12170.2; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

neXtProt entry for FAM212A Gene

Proteomics data for FAM212A Gene at MOPED

Post-translational modifications for FAM212A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM212A Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FAM212A Gene

Domains for FAM212A Gene

Protein Domains for FAM212A Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

F212A_HUMAN
Family:
  • Belongs to the FAM212 family.:
    • Q96EL1
genes like me logo Genes that share domains with FAM212A: view

No data available for Gene Families for FAM212A Gene

Function for FAM212A Gene

Gene Ontology (GO) - Molecular Function for FAM212A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with FAM212A: view

Phenotypes for FAM212A Gene

genes like me logo Genes that share phenotypes with FAM212A: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM212A Gene

Localization for FAM212A Gene

Gene Ontology (GO) - Cellular Components for FAM212A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0070062 extracellular exosome IDA 23376485
genes like me logo Genes that share ontologies with FAM212A: view

Pathways for FAM212A Gene

SuperPathways for FAM212A Gene

No Data Available

Interacting Proteins for FAM212A Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000329735%0d%0a9606.ENSP00000322957%0d%0a
Selected Interacting proteins: ENSP00000329735 Q96EL1-F212A_HUMAN for FAM212A Gene via STRING UniProtKB

Gene Ontology (GO) - Biological Process for FAM212A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0021915 neural tube development IEA --
genes like me logo Genes that share ontologies with FAM212A: view

No data available for Pathways by source for FAM212A Gene

Transcripts for FAM212A Gene

mRNA/cDNA for FAM212A Gene

(2) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(32) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM212A Gene

Family with sequence similarity 212, member A:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM212A Gene

No ASD Table

Relevant External Links for FAM212A Gene

GeneLoc Exon Structure for
FAM212A
ECgene alternative splicing isoforms for
FAM212A

Expression for FAM212A Gene

mRNA expression in normal human tissues for FAM212A Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for FAM212A Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (4.3) and Skin - Not Sun Exposed (Suprapubic) (4.0).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for FAM212A Gene

SOURCE GeneReport for Unigene cluster for FAM212A Gene Hs.86674

genes like me logo Genes that share expressions with FAM212A: view

Orthologs for FAM212A Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM212A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM212A 36
  • 99.65 (n)
  • 98.95 (a)
FAM212A 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FAM212A 36
  • 85.58 (n)
  • 83.33 (a)
FAM212A 37
  • 83 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FAM212A 36
  • 85.29 (n)
  • 81.85 (a)
FAM212A 37
  • 83 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fam212a 36
  • 83.1 (n)
  • 80.5 (a)
Fam212a 16
Fam212a 37
  • 79 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia FAM212A 37
  • 58 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fam212a 36
  • 83.1 (n)
  • 81.21 (a)
chicken
(Gallus gallus)
Aves FAM212A 36
  • 63.06 (n)
  • 56.76 (a)
lizard
(Anolis carolinensis)
Reptilia FAM212A 37
  • 35 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia fam212a 36
  • 52.2 (n)
  • 43.8 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.4864 36
zebrafish
(Danio rerio)
Actinopterygii fam212aa 37
  • 31 (a)
OneToMany
fam212ab 36
  • 49.66 (n)
  • 46.46 (a)
fam212ab 37
  • 32 (a)
OneToMany
wufi03b07 36
Species with no ortholog for FAM212A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM212A Gene

ENSEMBL:
Gene Tree for FAM212A (if available)
TreeFam:
Gene Tree for FAM212A (if available)

Paralogs for FAM212A Gene

Paralogs for FAM212A Gene

genes like me logo Genes that share paralogs with FAM212A: view

Variants for FAM212A Gene

Sequence variations from dbSNP and Humsavar for FAM212A Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs6798339 -- 49,803,278(+) GAGTC(G/T)CGCAG utr-variant-5-prime
rs6807837 -- 49,803,490(+) GGATG(C/T)CAGGC intron-variant
rs9843677 -- 49,804,529(+) TCCCC(A/G)TGCCC reference, missense
rs35680489 -- 49,802,182(+) CTTTC(-/T)TTTTT upstream-variant-2KB
rs68177279 -- 49,803,094(+) CTCGG(-/A)GGGGT upstream-variant-2KB

Relevant External Links for FAM212A Gene

HapMap Linkage Disequilibrium report
FAM212A

No data available for Structural Variations from Database of Genomic Variants (DGV) for FAM212A Gene

Disorders for FAM212A Gene

No disorders were found for FAM212A Gene.

No data available for UniProtKB/Swiss-Prot for FAM212A Gene

Publications for FAM212A Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  3. Generation and characterization of a novel neural crest marker allele, Inka1-LacZ, reveals a role for Inka1 in mouse neural tube closure. (PMID: 20175189) Reid B.S. … Williams T. (Dev. Dyn. 2010) 3
  4. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3
  5. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. (PMID: 23376485) Prunotto M. … Moll S. (J Proteomics 2013) 3

Products for FAM212A Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate FAM212A
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FAM212A
    • Block miRNA regulation of FAM212A using miScript Target Protectors

    Sources for FAM212A Gene

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