FAM20C Gene
protein-coding GIFtS : 55
GCID: GC07 P000290
family with sequence similarity 20, member C
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Aliasesfor FAM20C gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Family With Sequence Similarity 20, Member C 1 2 DKFZp547D0651 DMP41 2 3 5 IMAGE:49427371 Dentin Matrix Protein 42 3 RNS2 Golgi-Enriched Fraction Casein Kinase2 3 Extracellular Serine/Threonine Protein Kinase FAM20C2 DMP-42 3 EC 2.7.11.13 GEF-CK2 3 Protein FAM20C3
Export aliases for FAM20C gene to outside databases Previous GC identifers: GC07U900326 GC07P000276 GC07P000289
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Summariesfor FAM20C gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for FAM20C : This gene encodes a member of the family with sequence similarity 20 (FAM20) family of secreted proteins. A similar gene in mice encodes a protein that plays a role in dentin mineralization, and mutations in the human gene are associated with the autosomal recessive disorder Raine syndrome. (provided by RefSeq, Nov 2011) UniProtKB/Swiss-Prot: DMP4_HUMAN, Q8IXL6 Function : Calcium-binding kinase that phosphorylates the caseins and several secreted proteins implicated inbiomineralization, including the secretory calcium binding phosphoproteins (SCPP). Preferencially phosphorylates its targets within the S-x-E/pS motif Gene Wiki entry for FAM20C
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Genomic Viewsfor FAM20C gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000007.13 NC_018918.1 NT_007819.17 NT_079592.2 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the FAM20C gene promoter: Pax-5 HOXA3 LCR-F1 AREB6 MEF-2A FAC1 Sox9 aMEF-2 Meis-1a Meis-1 Other transcription factors Search SABiosciences Chromatin IP Primers for FAM20C Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat FAM20C
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 7p22.3 Ensembl cytogenetic band: 7p22.3 HGNC cytogenetic band: 7p22.3 FAM20C Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 7 GeneLoc Exon Structure
GeneLoc location for GC07P000290: view genomic region
(about GC identifiers )
Start:
192,969 bp from pter
End:
300,711 bp from pter
Size:
107,743 bases
Orientation:
plus strand
1 alternative location : Chr 7+,CRA_TCAG 303,573-364,779
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Proteinsfor FAM20C gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: DMP4_HUMAN, Q8IXL6 (See
protein sequence )Recommended Name: Extracellular serine/threonine protein kinase FAM20C precursor Size : 584 amino acids; 66234 Da
Subcellular location : Secreted (By similarity)
Sequence caution : Sequence=AAH40074.1; Type=Erroneous initiation; Note=Translation N-terminally extended;Sequence=EAL23705.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
Secondary accessions : A4D2Q5 Q5I0W9 Q7Z4I0 Q9NPT2Alternative splicing : 2 isoforms : Q8IXL6-1 Q8IXL6-2 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for FAM20C: NX_Q8IXL6 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q8IXL6 FAM20C Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_064608.2 ENSEMBL proteins: ENSP00000322323 Human Recombinant Protein Products: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005576 extracellular region
-- -- GO:0005615 extracellular space
IEA --
FAM20C for ontologies About GeneDecksing FAM20C Antibody Products: Assay Products for FAM20C:
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Protein
Domains / Familiesfor FAM20C gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
FAM20C for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q8IXL6 ProtoNet protein and cluster: Q8IXL6
1 Blocks protein family : IPB009581 Protein of unknown function DUF1193 UniProtKB/Swiss-Prot: DMP4_HUMAN, Q8IXL6 Similarity : Belongs to the FAM20 family
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Functionfor FAM20C gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: DMP4_HUMAN, Q8IXL6 Function : Calcium-binding kinase that phosphorylates the caseins and several secreted proteins implicated inbiomineralization, including the secretory calcium binding phosphoproteins (SCPP). Preferencially phosphorylates its targets within the S-x-E/pS motif Catalytic activity : ATP + a protein = ADP + a phosphoproteinEnzyme Number (IUBMB): EC 2.7.11.1 1
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for FAM20C (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for FAM20C (see all 3 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: FAM20C (NM_020223 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for FAM20C Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat FAM20C
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM20C
Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0004674 protein serine/threonine kinase activity
IEA -- GO:0005509 calcium ion binding
IEA -- GO:0046872 metal ion binding
-- --
FAM20C for ontologies About GeneDecksing 1 GenomeRNAi human phenotype for FAM20C :Animal Models: Mouse knock-out Fam20c tm1Lex for FAM20C 15/16 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Fam20c) (see all 16 ):
FAM20C for phenotypes About GeneDecksing
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Pathways & Interactionsfor FAM20C gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for FAM20C 5/8 Interacting proteins for FAM20C (Q8IXL6 2 , 3 ) via UniProtKB, MINT, STRING, and/or I2D (see all 8 )About this table Gene Ontology (GO): 5/10 biological process terms (GO ID links to tree view) (see all 10 ): About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0001501 skeletal system development
IEA -- GO:0030501 positive regulation of bone mineralization
IEA -- GO:0031214 biomineral tissue development
-- -- GO:0036179 osteoclast maturation
IEA -- GO:0040036 regulation of fibroblast growth factor receptor signaling pathway
IEA --
FAM20C for ontologies About GeneDecksing
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Drugs & Compoundsfor FAM20C gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for FAM20C 1 HMDB Compound for FAM20C About this table Search CenterWatch for drugs/clinical trials and news about FAM20C / DMP4
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Transcriptsfor FAM20C gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for FAM20C gene: NM_020223.3 Unigene Cluster for FAM20C:
Family with sequence similarity 20, member C Hs.134742 [show with all ESTs ] Unigene Representative Sequence: AK125281 5 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000313766 (uc003sip.3 ) ENST00000477004 ENST00000471328 ENST00000515795 (uc011jvn.2 )ENST00000512382 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for FAM20C (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for FAM20C (see all 3 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: FAM20C (NM_020223 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for FAM20C Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat FAM20C
Additional cDNA sequence: AF533706.1 AK054704.1 AK125281.1 AL390137.1 AL390147.1 BC009531.1 BC040074.1 BC068086.1 BC087853.1
12 DOTS entries : DT.430063 DT.91752628
DT.426172 DT.121645091 DT.121113546 DT.100059256 DT.92011743 DT.92068344 DT.121113541 DT.100828393 DT.95111829 DT.95344739 24/60 AceView cDNA sequences (see all 60 ):
AI871150 BX474815 CD723798 AW006130 AI964007 CD368083 BE779175 BU195990 BM681201 BM726547 BG926130 AK026140 BF512956 BG419616 BG326756 BQ017679 AI916511 BQ012203 BM747795 CO248712 BM836254 BM973979 BQ940628 CF128311 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for FAM20C About this scheme ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5 SP1 :     -       -     SP2 :           -     SP3 :     -   -   -   -     SP4 :              
ECgene alternative splicing isoforms for FAM20C
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Expression for FAM20C gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section FAM20C expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: CGCCCGTCGT
About this image FAM20C expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See FAM20C Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for FAM20C SOURCE GeneReport for Unigene cluster: Hs.134742 UniProtKB/Swiss-Prot: DMP4_HUMAN, Q8IXL6 Tissue specificity : Widely expressed SABiosciences Custom PCR Arrays for FAM20C Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for FAM20CBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat FAM20C QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat FAM20C QIAGEN QuantiFast Probe-based Assays in human , mouse , rat FAM20C In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM20C
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Orthologsfor FAM20C gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for FAM20C gene from 5/16 species (see all 16 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
FAM20C1
family with sequence similarity 20, member C
75.74(n) 84.54(a)
 
416445 XM_414753.3 XP_414753.3
lizard (Anolis carolinensis)
Reptilia
FAM20C6
--
72(a)
1 ↔ 1
GL343385.1(390325-428757)
zebrafish (Danio rerio)
Actinopterygii
LOC5603971
dentin matrix protein 4-like
69.55(n) 75.87(a)
 
560397 XM_683800.5 XP_688892.5
fruit fly (Drosophila melanogaster)
Insecta
CG311456
--
22(a)
1 → many
3R(19431473-19495378)
worm (Caenorhabditis elegans)
Secernentea
H03A11.16
Protein H03A11.1
32(a)
1 → many
X(15209222-15213190)
ENSEMBL Gene Tree for FAM20C (if available)TreeFam Gene Tree for FAM20C (if available)
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Paralogsfor FAM20C gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for FAM20C gene FAM20A 2 FAM20B 2 2 SIMAP similar genes for FAM20C using alignment to 1 protein entry: DMP4_HUMAN :FAM20A FAM20B
FAM20C for paralogs About GeneDecksing
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Genomic Variantsfor FAM20C gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 7 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More