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Aliases for FAM209B Gene

Aliases for FAM209B Gene

  • Family With Sequence Similarity 209, Member B 2 3
  • C20orf107 3 4
  • Chromosome 20 Open Reading Frame 107 2
  • Uncharacterized Protein C20orf107 3
  • Protein FAM209B 3
  • DJ1153D9.4 3

External Ids for FAM209B Gene

Previous HGNC Symbols for FAM209B Gene

  • C20orf107

Previous GeneCards Identifiers for FAM209B Gene

  • GC20P055109

Summaries for FAM209B Gene

GeneCards Summary for FAM209B Gene

FAM209B (Family With Sequence Similarity 209, Member B) is a Protein Coding gene. An important paralog of this gene is FAM209A.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM209B Gene

Genomics for FAM209B Gene

Genomic Location for FAM209B Gene

Start:
56,527,171 bp from pter
End:
56,536,520 bp from pter
Size:
9,350 bases
Orientation:
Plus strand

Genomic View for FAM209B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM209B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM209B Gene

No data available for Regulatory Elements for FAM209B Gene

Proteins for FAM209B Gene

  • Protein details for FAM209B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5JX69-F209B_HUMAN
    Recommended name:
    Protein FAM209B
    Protein Accession:
    Q5JX69
    Secondary Accessions:
    • Q3KRB5

    Protein attributes for FAM209B Gene

    Size:
    171 amino acids
    Molecular mass:
    19499 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM209B Gene

Proteomics data for FAM209B Gene at MOPED

Post-translational modifications for FAM209B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM209B Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FAM209B Gene

Domains for FAM209B Gene

Protein Domains for FAM209B Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q5JX69

UniProtKB/Swiss-Prot:

F209B_HUMAN :
  • Q5JX69
Family:
  • Belongs to the FAM209 family.
genes like me logo Genes that share domains with FAM209B: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for FAM209B Gene

Function for FAM209B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM209B Gene

Localization for FAM209B Gene

Subcellular locations from UniProtKB/Swiss-Prot for FAM209B Gene

Membrane; Single-pass type I membrane protein.

Gene Ontology (GO) - Cellular Components for FAM209B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 21630459
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with FAM209B: view

No data available for Subcellular locations from COMPARTMENTS for FAM209B Gene

Pathways for FAM209B Gene

SuperPathways for FAM209B Gene

No Data Available

Interacting Proteins for FAM209B Gene

Gene Ontology (GO) - Biological Process for FAM209B Gene

None

No data available for Pathways by source for FAM209B Gene

Transcripts for FAM209B Gene

mRNA/cDNA for FAM209B Gene

(1) Selected AceView cDNA sequences:
(3) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM209B Gene

Family with sequence similarity 209, member B:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM209B Gene

No ASD Table

Relevant External Links for FAM209B Gene

GeneLoc Exon Structure for
FAM209B
ECgene alternative splicing isoforms for
FAM209B

Expression for FAM209B Gene

mRNA expression in normal human tissues for FAM209B Gene

mRNA differential expression in normal tissues according to GTEx for FAM209B Gene

This gene is overexpressed in Testis (36.7) and Whole Blood (4.5).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for FAM209B Gene

SOURCE GeneReport for Unigene cluster for FAM209B Gene Hs.287759

genes like me logo Genes that share expressions with FAM209B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for FAM209B Gene

Orthologs for FAM209B Gene

This gene was present in the common ancestor of mammals.

Orthologs for FAM209B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM209B 36
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 36
  • 33 (a)
ManyToMany
-- 36
  • 34 (a)
ManyToMany
-- 36
  • 41 (a)
ManyToMany
-- 36
  • 43 (a)
ManyToMany
FAM209B 35
  • 75.35 (n)
  • 61.21 (a)
FAM209B 36
  • 61 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia C24H20ORF106 36
  • 67 (a)
OneToMany
FAM209B 35
  • 78.97 (n)
  • 69.05 (a)
mouse
(Mus musculus)
Mammalia Fam209 35
  • 72.56 (n)
  • 60.37 (a)
Fam209 16
Fam209 36
  • 59 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 32 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Fam209a 35
  • 72.62 (n)
  • 60.12 (a)
Species with no ortholog for FAM209B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FAM209B Gene

ENSEMBL:
Gene Tree for FAM209B (if available)
TreeFam:
Gene Tree for FAM209B (if available)

Paralogs for FAM209B Gene

Paralogs for FAM209B Gene

Selected SIMAP similar genes for FAM209B Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM209B: view

Variants for FAM209B Gene

Sequence variations from dbSNP and Humsavar for FAM209B Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs2296128 -- 56,536,217(+) CTCCA(C/T)TAAAG reference, synonymous-codon
rs2296129 - 56,536,308(+) GTCCG(A/C)AGTGC reference, missense
rs2296130 -- 56,536,315(+) GTGCA(A/G)AATCT synonymous-codon, reference
rs2426631 -- 56,533,282(+) AGTCT(C/T)CCAGT utr-variant-5-prime, missense, reference, intron-variant
rs3209183 - 56,533,561(+) TACTG(A/C)AGTGT missense, reference

Relevant External Links for FAM209B Gene

HapMap Linkage Disequilibrium report
FAM209B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for FAM209B Gene

Disorders for FAM209B Gene

No disorders were found for FAM209B Gene.

No data available for UniProtKB/Swiss-Prot for FAM209B Gene

Publications for FAM209B Gene

  1. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Proteomic characterization of the human sperm nucleus. (PMID: 21630459) de Mateo S. … Oliva R. (Proteomics 2011) 3
  4. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for FAM209B Gene

Sources for FAM209B Gene

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