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Aliases for FAM209A Gene

Aliases for FAM209A Gene

  • Family With Sequence Similarity 209, Member A 2 3
  • C20orf106 3 4
  • Chromosome 20 Open Reading Frame 106 2
  • Uncharacterized Protein C20orf106 3
  • DJ1153D9.3 3

External Ids for FAM209A Gene

Previous HGNC Symbols for FAM209A Gene

  • C20orf106

Previous GeneCards Identifiers for FAM209A Gene

  • GC20P055093

Summaries for FAM209A Gene

GeneCards Summary for FAM209A Gene

FAM209A (Family With Sequence Similarity 209, Member A) is a Protein Coding gene. An important paralog of this gene is FAM209B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM209A Gene

Genomics for FAM209A Gene

Genomic Location for FAM209A Gene

Chromosome:
20
Start:
56,517,187 bp from pter
End:
56,526,152 bp from pter
Size:
8,966 bases
Orientation:
Plus strand

Genomic View for FAM209A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for FAM209A Gene

No data available for Regulatory Elements for FAM209A Gene

Proteins for FAM209A Gene

  • Protein details for FAM209A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5JX71-F209A_HUMAN
    Recommended name:
    Protein FAM209A
    Protein Accession:
    Q5JX71
    Secondary Accessions:
    • Q05C43

    Protein attributes for FAM209A Gene

    Size:
    171 amino acids
    Molecular mass:
    19603 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH29411.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305};

neXtProt entry for FAM209A Gene

Proteomics data for FAM209A Gene at MOPED

Post-translational modifications for FAM209A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM209A Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FAM209A Gene

Domains & Families for FAM209A Gene

Protein Domains for FAM209A Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q5JX71

UniProtKB/Swiss-Prot:

F209A_HUMAN :
  • Belongs to the FAM209 family.
Family:
  • Belongs to the FAM209 family.
genes like me logo Genes that share domains with FAM209A: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for FAM209A Gene

Function for FAM209A Gene

Gene Ontology (GO) - Molecular Function for FAM209A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with FAM209A: view

Phenotypes for FAM209A Gene

GenomeRNAi human phenotypes for FAM209A:
genes like me logo Genes that share phenotypes with FAM209A: view

Animal Model Products

CRISPR Products

miRNA for FAM209A Gene

miRTarBase miRNAs that target FAM209A

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FAM209A

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for FAM209A Gene

Localization for FAM209A Gene

Subcellular locations from UniProtKB/Swiss-Prot for FAM209A Gene

Membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM209A Gene COMPARTMENTS Subcellular localization image for FAM209A gene
Compartment Confidence
extracellular 5
nucleus 5

Gene Ontology (GO) - Cellular Components for FAM209A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 21630459
GO:0016021 integral component of membrane IEA --
GO:0070062 extracellular exosome IDA 19056867
genes like me logo Genes that share ontologies with FAM209A: view

Pathways & Interactions for FAM209A Gene

SuperPathways for FAM209A Gene

No Data Available

Interacting Proteins for FAM209A Gene

Gene Ontology (GO) - Biological Process for FAM209A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with FAM209A: view

No data available for Pathways by source and SIGNOR curated interactions for FAM209A Gene

Drugs & Compounds for FAM209A Gene

No Compound Related Data Available

Transcripts for FAM209A Gene

mRNA/cDNA for FAM209A Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(781) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM209A Gene

Family with sequence similarity 209, member A:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FAM209A

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM209A Gene

No ASD Table

Relevant External Links for FAM209A Gene

GeneLoc Exon Structure for
FAM209A
ECgene alternative splicing isoforms for
FAM209A

Expression for FAM209A Gene

mRNA expression in normal human tissues for FAM209A Gene

mRNA differential expression in normal tissues according to GTEx for FAM209A Gene

This gene is overexpressed in Testis (x32.0) and Whole Blood (x7.8).

Protein differential expression in normal tissues from HIPED for FAM209A Gene

This gene is overexpressed in Testis (47.6) and Ovary (21.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FAM209A Gene



SOURCE GeneReport for Unigene cluster for FAM209A Gene Hs.504907

genes like me logo Genes that share expression patterns with FAM209A: view

Protein tissue co-expression partners for FAM209A Gene

- Elite partner

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for FAM209A Gene

Orthologs for FAM209A Gene

This gene was present in the common ancestor of mammals.

Orthologs for FAM209A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM209A 35
  • 97.86 (n)
  • 95.32 (a)
FAM209A 36
  • 95 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 36
  • 35 (a)
ManyToMany
-- 36
  • 36 (a)
ManyToMany
-- 36
  • 39 (a)
ManyToMany
-- 36
  • 45 (a)
ManyToMany
FAM209B 36
  • 61 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia C24H20ORF106 36
  • 67 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Fam209 36
  • 61 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 31 (a)
OneToMany
Species with no ortholog for FAM209A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FAM209A Gene

ENSEMBL:
Gene Tree for FAM209A (if available)
TreeFam:
Gene Tree for FAM209A (if available)

Paralogs for FAM209A Gene

Paralogs for FAM209A Gene

(1) SIMAP similar genes for FAM209A Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM209A: view

Variants for FAM209A Gene

Sequence variations from dbSNP and Humsavar for FAM209A Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
VAR_029621 -
VAR_029622 -
VAR_029623 -
VAR_029624 -
VAR_033761 -

Variation tolerance for FAM209A Gene

Residual Variation Intolerance Score: 92.07% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.90; 18.68% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FAM209A Gene

HapMap Linkage Disequilibrium report
FAM209A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for FAM209A Gene

Disorders for FAM209A Gene

Relevant External Links for FAM209A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM209A
genes like me logo Genes that share disorders with FAM209A: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM209A Gene

Publications for FAM209A Gene

  1. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 67
  2. A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus. (PMID: 25130324) Cai D.C. … Hagoort P. (Genes Brain Behav. 2014) 67
  3. Proteomic characterization of the human sperm nucleus. (PMID: 21630459) de Mateo S. … Oliva R. (Proteomics 2011) 67
  4. Large-scale proteomics and phosphoproteomics of urinary exosomes. (PMID: 19056867) Gonzales P.A. … Knepper M.A. (J. Am. Soc. Nephrol. 2009) 67
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 67

Products for FAM209A Gene

Sources for FAM209A Gene

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