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Aliases for FAM209A Gene

Aliases for FAM209A Gene

  • Family With Sequence Similarity 209 Member A 2 3 5
  • C20orf106 3 4
  • Family With Sequence Similarity 209, Member A 2
  • Chromosome 20 Open Reading Frame 106 2
  • Uncharacterized Protein C20orf106 3
  • Protein FAM209A 3
  • DJ1153D9.3 3

External Ids for FAM209A Gene

Previous HGNC Symbols for FAM209A Gene

  • C20orf106

Previous GeneCards Identifiers for FAM209A Gene

  • GC20P055093

Summaries for FAM209A Gene

GeneCards Summary for FAM209A Gene

FAM209A (Family With Sequence Similarity 209 Member A) is a Protein Coding gene. An important paralog of this gene is FAM209B.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM209A Gene

Genomics for FAM209A Gene

Regulatory Elements for FAM209A Gene

Enhancers for FAM209A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20G056426 1.4 Ensembl ENCODE dbSUPER 10.5 -88.3 -88261 5.8 HDAC1 TBL1XR1 RAD21 TCF12 GATA2 EGR1 FOS ETV6 CREM EGR2 CASS4 RTFDC1 RPL39P FAM209A FAM210B
GH20G056483 1 Ensembl ENCODE dbSUPER 11.6 -33.3 -33255 1.3 CTCF RAD51 ZBTB40 FAM209A RPL39P CSTF1 AURKA FAM210B LOC105372681 RTFDC1
GH20G056515 0.6 ENCODE 0.7 -1.0 -975 2.0 SIX4 CTCF ZSCAN4 SMC3 YBX1 PAX8 RAD21 FAM209A LOC105372681
GH20G056513 0.4 ENCODE 0.7 -3.8 -3848 0.2 ATF2 CASS4 FAM209A LOC105372681
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM209A on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM209A Gene

56,517,187 bp from pter
56,526,152 bp from pter
8,966 bases
Plus strand

Genomic View for FAM209A Gene

Genes around FAM209A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM209A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM209A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM209A Gene

Proteins for FAM209A Gene

  • Protein details for FAM209A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Protein FAM209A
    Protein Accession:
    Secondary Accessions:
    • Q05C43

    Protein attributes for FAM209A Gene

    171 amino acids
    Molecular mass:
    19603 Da
    Quaternary structure:
    No Data Available
    • Sequence=AAH29411.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305};

neXtProt entry for FAM209A Gene

Post-translational modifications for FAM209A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM209A Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FAM209A Gene

Domains & Families for FAM209A Gene

Protein Domains for FAM209A Gene


Graphical View of Domain Structure for InterPro Entry



  • Belongs to the FAM209 family.
  • Belongs to the FAM209 family.
genes like me logo Genes that share domains with FAM209A: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for FAM209A Gene

Function for FAM209A Gene

Gene Ontology (GO) - Molecular Function for FAM209A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with FAM209A: view

Phenotypes for FAM209A Gene

genes like me logo Genes that share phenotypes with FAM209A: view

Animal Model Products

CRISPR Products

miRNA for FAM209A Gene

miRTarBase miRNAs that target FAM209A

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FAM209A Gene

Localization for FAM209A Gene

Subcellular locations from UniProtKB/Swiss-Prot for FAM209A Gene

Membrane; Single-pass type I membrane protein.

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FAM209A gene
Compartment Confidence
extracellular 5
nucleus 5
plasma membrane 1

Gene Ontology (GO) - Cellular Components for FAM209A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 21630459
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
GO:0070062 extracellular exosome IDA 19056867
genes like me logo Genes that share ontologies with FAM209A: view

Pathways & Interactions for FAM209A Gene

SuperPathways for FAM209A Gene

No Data Available

Interacting Proteins for FAM209A Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
Selected Interacting proteins: ENSP00000360379 Q5JX71-F209A_HUMAN for FAM209A Gene via STRING IID

Gene Ontology (GO) - Biological Process for FAM209A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with FAM209A: view

No data available for Pathways by source and SIGNOR curated interactions for FAM209A Gene

Drugs & Compounds for FAM209A Gene

No Compound Related Data Available

Transcripts for FAM209A Gene

mRNA/cDNA for FAM209A Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(781) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM209A Gene

Family with sequence similarity 209, member A:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM209A Gene

No ASD Table

Relevant External Links for FAM209A Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for FAM209A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM209A Gene

mRNA differential expression in normal tissues according to GTEx for FAM209A Gene

This gene is overexpressed in Testis (x32.0) and Whole Blood (x7.8).

Protein differential expression in normal tissues from HIPED for FAM209A Gene

This gene is overexpressed in Testis (47.6) and Ovary (21.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FAM209A Gene

Protein tissue co-expression partners for FAM209A Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of FAM209A Gene:


SOURCE GeneReport for Unigene cluster for FAM209A Gene:

genes like me logo Genes that share expression patterns with FAM209A: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM209A Gene

Orthologs for FAM209A Gene

This gene was present in the common ancestor of mammals.

Orthologs for FAM209A Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia FAM209A 34 35
  • 97.86 (n)
(Canis familiaris)
Mammalia C24H20ORF106 35
  • 67 (a)
(Bos Taurus)
Mammalia FAM209B 35
  • 61 (a)
-- 35
  • 45 (a)
-- 35
  • 39 (a)
-- 35
  • 36 (a)
-- 35
  • 35 (a)
(Mus musculus)
Mammalia Fam209 35
  • 61 (a)
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 31 (a)
Species where no ortholog for FAM209A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FAM209A Gene

Gene Tree for FAM209A (if available)
Gene Tree for FAM209A (if available)

Paralogs for FAM209A Gene

Paralogs for FAM209A Gene

(1) SIMAP similar genes for FAM209A Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM209A: view

Variants for FAM209A Gene

Sequence variations from dbSNP and Humsavar for FAM209A Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1000002174 -- 56,527,567(+) GGGGC(C/T)GGTAC intron-variant, upstream-variant-2KB
rs1000155827 -- 56,533,760(+) ACAAT(A/T)GTCCC intron-variant, downstream-variant-500B
rs1000161665 -- 56,526,733(+) CTCCA(A/G)CCTGG intron-variant, upstream-variant-2KB
rs1000562973 -- 56,524,050(+) GTGGG(C/T)CGGGC intron-variant, upstream-variant-2KB
rs1000892213 -- 56,527,619(+) CCCAG(A/G)GCGCA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FAM209A Gene

Variant ID Type Subtype PubMed ID
nsv1056574 CNV gain 25217958
nsv525425 CNV gain 19592680
nsv834015 CNV loss 17160897

Variation tolerance for FAM209A Gene

Residual Variation Intolerance Score: 92.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.90; 18.68% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FAM209A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM209A Gene

Disorders for FAM209A Gene

Relevant External Links for FAM209A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for FAM209A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM209A Gene

Publications for FAM209A Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  2. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4 64
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  4. A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus. (PMID: 25130324) Cai D.C. … Hagoort P. (Genes Brain Behav. 2014) 3 64
  5. Proteomic characterization of the human sperm nucleus. (PMID: 21630459) de Mateo S. … Oliva R. (Proteomics 2011) 3 64

Products for FAM209A Gene

Sources for FAM209A Gene

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