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Aliases for FAM209A Gene

Aliases for FAM209A Gene

  • Family With Sequence Similarity 209, Member A 2 3
  • C20orf106 3 4
  • Chromosome 20 Open Reading Frame 106 2
  • Uncharacterized Protein C20orf106 3
  • Protein FAM209A 3
  • DJ1153D9.3 3

External Ids for FAM209A Gene

Previous Symbols for FAM209A Gene

  • C20orf106

Summaries for FAM209A Gene

GeneCards Summary for FAM209A Gene

FAM209A (Family With Sequence Similarity 209, Member A) is a Protein Coding gene. An important paralog of this gene is FAM209B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM209A Gene

Genomics for FAM209A Gene

Genomic Location for FAM209A Gene

Start:
56,517,187 bp from pter
End:
56,526,152 bp from pter
Size:
8,966 bases
Orientation:
Plus strand

Genomic View for FAM209A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM209A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM209A Gene

No data available for Regulatory Elements for FAM209A Gene

Proteins for FAM209A Gene

  • Protein details for FAM209A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5JX71-F209A_HUMAN
    Recommended name:
    Protein FAM209A
    Protein Accession:
    Q5JX71
    Secondary Accessions:
    • Q05C43

    Protein attributes for FAM209A Gene

    Size:
    171 amino acids
    Molecular mass:
    19603 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH29411.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305};

neXtProt entry for FAM209A Gene

Proteomics data for FAM209A Gene at MOPED

Post-translational modifications for FAM209A Gene

No Post-translational modifications

Other Protein References for FAM209A Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FAM209A Gene

Domains for FAM209A Gene

Protein Domains for FAM209A Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

F209A_HUMAN
Family:
  • Belongs to the FAM209 family.:
    • Q5JX71
genes like me logo Genes that share domains with FAM209A: view

No data available for Gene Families for FAM209A Gene

Function for FAM209A Gene

Gene Ontology (GO) - Molecular Function for FAM209A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with FAM209A: view

miRNA for FAM209A Gene

miRTarBase miRNAs that target FAM209A

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for FAM209A Gene

Localization for FAM209A Gene

Subcellular locations from UniProtKB/Swiss-Prot for FAM209A Gene

Membrane; Single-pass type I membrane protein.

Gene Ontology (GO) - Cellular Components for FAM209A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 21630459
GO:0016021 integral component of membrane IEA --
GO:0070062 extracellular exosome IDA 19056867
genes like me logo Genes that share ontologies with FAM209A: view

Pathways for FAM209A Gene

SuperPathways for FAM209A Gene

No Data Available

Interacting Proteins for FAM209A Gene

Gene Ontology (GO) - Biological Process for FAM209A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with FAM209A: view

No data available for Pathways by source for FAM209A Gene

Transcripts for FAM209A Gene

mRNA/cDNA for FAM209A Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(781) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM209A Gene

Family with sequence similarity 209, member A:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM209A Gene

No ASD Table

Relevant External Links for FAM209A Gene

GeneLoc Exon Structure for
FAM209A
ECgene alternative splicing isoforms for
FAM209A

Expression for FAM209A Gene

mRNA expression in normal human tissues for FAM209A Gene

mRNA differential expression in normal tissues according to GTEx for FAM209A Gene

This gene is overexpressed in Testis (32.0) and Whole Blood (7.8).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for FAM209A Gene

SOURCE GeneReport for Unigene cluster for FAM209A Gene Hs.504907

genes like me logo Genes that share expressions with FAM209A: view

Orthologs for FAM209A Gene

This gene was present in the common ancestor of mammals.

Orthologs for FAM209A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM209A 36
  • 97.86 (n)
  • 95.32 (a)
FAM209A 37
  • 95 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 37
  • 35 (a)
ManyToMany
-- 37
  • 36 (a)
ManyToMany
-- 37
  • 39 (a)
ManyToMany
-- 37
  • 45 (a)
ManyToMany
FAM209B 37
  • 61 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia C24H20ORF106 37
  • 67 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Fam209 37
  • 61 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 31 (a)
OneToMany
Species with no ortholog for FAM209A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FAM209A Gene

ENSEMBL:
Gene Tree for FAM209A (if available)
TreeFam:
Gene Tree for FAM209A (if available)

Paralogs for FAM209A Gene

Paralogs for FAM209A Gene

Selected SIMAP similar genes for FAM209A Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM209A: view

Variants for FAM209A Gene

Sequence variations from dbSNP and Humsavar for FAM209A Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
VAR_029621 -
VAR_029622 -
VAR_029623 -
VAR_029624 -
VAR_033761 -

Relevant External Links for FAM209A Gene

HapMap Linkage Disequilibrium report
FAM209A

No data available for Structural Variations from Database of Genomic Variants (DGV) for FAM209A Gene

Disorders for FAM209A Gene

No disorders were found for FAM209A Gene.

No data available for UniProtKB/Swiss-Prot for FAM209A Gene

Publications for FAM209A Gene

  1. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Large-scale proteomics and phosphoproteomics of urinary exosomes. (PMID: 19056867) Gonzales P.A. … Knepper M.A. (J. Am. Soc. Nephrol. 2009) 3
  4. Proteomic characterization of the human sperm nucleus. (PMID: 21630459) de Mateo S. … Oliva R. (Proteomics 2011) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for FAM209A Gene

Sources for FAM209A Gene

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