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Aliases for FAM201A Gene

Subcategory (RNA class) for FAM201A Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM201A Gene

  • Family With Sequence Similarity 201 Member A 2 3 5
  • C9orf122 3 4
  • Family With Sequence Similarity 201, Member A 2
  • Chromosome 9 Open Reading Frame 122 2

External Ids for FAM201A Gene

Previous HGNC Symbols for FAM201A Gene

  • C9orf122

Summaries for FAM201A Gene

GeneCards Summary for FAM201A Gene

FAM201A (Family With Sequence Similarity 201 Member A) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAM201A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM201A Gene

Genomics for FAM201A Gene

Regulatory Elements for FAM201A Gene

Enhancers for FAM201A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H038619 1 ENCODE 8.5 +0.1 138 1 HDGF ARID4B SIN3A DMAP1 ZNF2 BRCA1 YY1 ZNF121 GLIS2 ELK1 TRMT10B EXOSC3 ANKRD18A DCAF10 FAM201A
GH09H038685 0.4 ENCODE 5.2 +65.3 65269 0 POU5F1 BATF CNTNAP3 FAM201A RNU6-765P FAM240B
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM201A on UCSC Golden Path with GeneCards custom track

Promoters for FAM201A Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000235005 326 1601 HDGF ARID4B SIN3A DMAP1 ZNF2 BRCA1 YY1 ZNF121 GLIS2 ELK1

Genomic Location for FAM201A Gene

Chromosome:
9
Start:
38,620,474 bp from pter
End:
38,624,990 bp from pter
Size:
4,517 bases
Orientation:
Plus strand

Genomic View for FAM201A Gene

Genes around FAM201A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM201A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM201A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM201A Gene

Proteins for FAM201A Gene

  • Protein details for FAM201A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5SY85-F201A_HUMAN
    Recommended name:
    Protein FAM201A
    Protein Accession:
    Q5SY85

    Protein attributes for FAM201A Gene

    Size:
    155 amino acids
    Molecular mass:
    16478 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM201A Gene

Post-translational modifications for FAM201A Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM201A Gene

Domains & Families for FAM201A Gene

Protein Domains for FAM201A Gene

ProtoNet:

Suggested Antigen Peptide Sequences for FAM201A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FAM201A: view

No data available for Gene Families and UniProtKB/Swiss-Prot for FAM201A Gene

Function for FAM201A Gene

Phenotypes for FAM201A Gene

GenomeRNAi human phenotypes for FAM201A:
genes like me logo Genes that share phenotypes with FAM201A: view

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for FAM201A
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM201A Gene

Localization for FAM201A Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FAM201A gene
Compartment Confidence
extracellular 2
mitochondrion 1
nucleus 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM201A Gene

Pathways & Interactions for FAM201A Gene

SuperPathways for FAM201A Gene

No Data Available

Interacting Proteins for FAM201A Gene

Gene Ontology (GO) - Biological Process for FAM201A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM201A Gene

Drugs & Compounds for FAM201A Gene

No Compound Related Data Available

Transcripts for FAM201A Gene

mRNA/cDNA for FAM201A Gene

(4) Additional mRNA sequences :
(10) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM201A Gene

Family with sequence similarity 201, member A:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for FAM201A
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for FAM201A Gene

No ASD Table

Relevant External Links for FAM201A Gene

GeneLoc Exon Structure for
FAM201A
ECgene alternative splicing isoforms for
FAM201A

Expression for FAM201A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM201A Gene

mRNA differential expression in normal tissues according to GTEx for FAM201A Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x5.2) and Brain - Nucleus accumbens (basal ganglia) (x4.9).

Protein differential expression in normal tissues from HIPED for FAM201A Gene

This gene is overexpressed in Peripheral blood mononuclear cells (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FAM201A Gene



Protein tissue co-expression partners for FAM201A Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM201A Gene:

FAM201A

SOURCE GeneReport for Unigene cluster for FAM201A Gene:

Hs.632652
genes like me logo Genes that share expression patterns with FAM201A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM201A Gene

Orthologs for FAM201A Gene

Evolution for FAM201A Gene

ENSEMBL:
Gene Tree for FAM201A (if available)
TreeFam:
Gene Tree for FAM201A (if available)

No data available for Orthologs for FAM201A Gene

Paralogs for FAM201A Gene

No data available for Paralogs for FAM201A Gene

Variants for FAM201A Gene

Sequence variations from dbSNP and Humsavar for FAM201A Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000037044 -- 38,623,399(+) GTCTC(G/T)GCTCA downstream-variant-500B
rs1001431459 -- 38,622,352(+) GCTTG(C/T)TCCCG nc-transcript-variant, upstream-variant-2KB
rs1002133503 -- 38,622,675(+) AAGCG(C/T)TGGGA nc-transcript-variant
rs1003892492 -- 38,623,768(+) CTGTT(C/G)CGTTG downstream-variant-500B
rs1004264546 -- 38,623,500(+) CATCA(C/T)ATTGT downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for FAM201A Gene

Variant ID Type Subtype PubMed ID
dgv12686n54 CNV gain 21841781
dgv261e55 CNV loss 17911159
esv27275 CNV loss 19812545
esv3620429 CNV loss 21293372
nsv1020605 CNV gain 25217958
nsv1028978 CNV loss 25217958
nsv8445 CNV gain+loss 18304495
nsv982218 CNV duplication 23825009

Relevant External Links for FAM201A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM201A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM201A Gene

Disorders for FAM201A Gene

Relevant External Links for FAM201A

Genetic Association Database (GAD)
FAM201A
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM201A

No disorders were found for FAM201A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM201A Gene

Publications for FAM201A Gene

  1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray SJ … Dunham I (Nature 2004) 3 4 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 60
  3. Cross-disorder genome-wide analyses suggest a complex genetic relationship between Tourette's syndrome and OCD. (PMID: 25158072) Yu D … Pauls DL (The American journal of psychiatry 2015) 3 60

Products for FAM201A Gene

Sources for FAM201A Gene

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