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Aliases for FAM201A Gene

Subcategory (RNA class) for FAM201A Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for FAM201A Gene

  • Family With Sequence Similarity 201, Member A 2 3
  • C9orf122 3 4
  • Chromosome 9 Open Reading Frame 122 2

External Ids for FAM201A Gene

ORGUL Members for FAM201A Gene

Previous Symbols for FAM201A Gene

  • C9orf122

Summaries for FAM201A Gene

GeneCards Summary for FAM201A Gene

FAM201A (Family With Sequence Similarity 201, Member A) is a RNA Gene, and belongs to lncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM201A Gene

Genomics for FAM201A Gene

Genomic Location for FAM201A Gene

Start:
38,620,474 bp from pter
End:
38,624,990 bp from pter
Size:
4,517 bases
Orientation:
Plus strand

Genomic View for FAM201A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM201A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM201A Gene

No data available for Regulatory Elements for FAM201A Gene

Proteins for FAM201A Gene

  • Protein details for FAM201A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5SY85-F201A_HUMAN
    Recommended name:
    Protein FAM201A
    Protein Accession:
    Q5SY85
    Secondary Accessions:

    Protein attributes for FAM201A Gene

    Size:
    155 amino acids
    Molecular mass:
    16478 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM201A Gene

Proteomics data for FAM201A Gene at MOPED

Post-translational modifications for FAM201A Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM201A Gene

Domains for FAM201A Gene

Gene Families for FAM201A Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for FAM201A Gene

ProtoNet:
genes like me logo Genes that share domains with FAM201A: view

No data available for UniProtKB/Swiss-Prot for FAM201A Gene

Function for FAM201A Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM201A Gene

Localization for FAM201A Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM201A Gene COMPARTMENTS Subcellular localization image for FAM201A gene
Compartment Confidence
extracellular 2
cytosol 1
mitochondrion 1
nucleus 1

No data available for Gene Ontology (GO) - Cellular Components for FAM201A Gene

Pathways for FAM201A Gene

SuperPathways for FAM201A Gene

No Data Available

Interacting Proteins for FAM201A Gene

Gene Ontology (GO) - Biological Process for FAM201A Gene

None

No data available for Pathways by source for FAM201A Gene

Transcripts for FAM201A Gene

mRNA/cDNA for FAM201A Gene

(4) Additional mRNA sequences :
(10) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM201A Gene

Family with sequence similarity 201, member A:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM201A Gene

No ASD Table

Relevant External Links for FAM201A Gene

GeneLoc Exon Structure for
FAM201A
ECgene alternative splicing isoforms for
FAM201A

Expression for FAM201A Gene

mRNA expression in normal human tissues for FAM201A Gene

mRNA differential expression in normal tissues according to GTEx for FAM201A Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (5.2) and Brain - Nucleus accumbens (basal ganglia) (4.9).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for FAM201A Gene

SOURCE GeneReport for Unigene cluster for FAM201A Gene Hs.632652

genes like me logo Genes that share expressions with FAM201A: view

Orthologs for FAM201A Gene

Evolution for FAM201A Gene

ENSEMBL:
Gene Tree for FAM201A (if available)
TreeFam:
Gene Tree for FAM201A (if available)

No data available for Orthologs for FAM201A Gene

Paralogs for FAM201A Gene

genes like me logo Genes that share paralogs with FAM201A: view

No data available for Paralogs for FAM201A Gene

Variants for FAM201A Gene

Sequence variations from dbSNP and Humsavar for FAM201A Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs35922799 -- 38,623,611(+) AATTC(-/T)TTTTT downstream-variant-500B
rs79764797 -- 38,622,934(+) TCTTC(C/T)TTCAT nc-transcript-variant
rs113749995 -- 38,623,530(+) TTGTG(A/G)TTTGA downstream-variant-500B
rs144558546 -- 38,623,398(+) GGTCT(C/T)GGCTC downstream-variant-500B
rs181674914 -- 38,623,637(+) ATATA(G/T)ACATA downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for FAM201A Gene

Variant ID Type Subtype PubMed ID
nsv8445 CNV Gain+Loss 18304495
dgv261e55 CNV Loss 17911159
dgv2312e1 CNV Complex 17122850
dgv2313e1 CNV Complex 17122850
esv27275 CNV Loss 19812545

Relevant External Links for FAM201A Gene

HapMap Linkage Disequilibrium report
FAM201A

Disorders for FAM201A Gene

Relevant External Links for FAM201A

Genetic Association Database (GAD)
FAM201A
genes like me logo Genes that share disorders with FAM201A: view

No data available for UniProtKB/Swiss-Prot for FAM201A Gene

Publications for FAM201A Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4

Products for FAM201A Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate FAM201A
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FAM201A
    • Block miRNA regulation of FAM201A using miScript Target Protectors

    Sources for FAM201A Gene

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