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Aliases for FAM200A Gene

Aliases for FAM200A Gene

  • Family With Sequence Similarity 200, Member A 2 3
  • C7orf38 3 4
  • Chromosome 7 Open Reading Frame 38 2
  • Protein FAM200A 3

External Ids for FAM200A Gene

Previous HGNC Symbols for FAM200A Gene

  • C7orf38

Previous GeneCards Identifiers for FAM200A Gene

  • GC07M099143
  • GC07M093780

Summaries for FAM200A Gene

Entrez Gene Summary for FAM200A Gene

  • This gene encodes a protein of unknown function. The protein is weakly similar to transposase-like proteins in human and mouse. [provided by RefSeq, Jul 2008]

GeneCards Summary for FAM200A Gene

FAM200A (Family With Sequence Similarity 200, Member A) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding. An important paralog of this gene is FAM200B.

Gene Wiki entry for FAM200A Gene

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM200A Gene

Genomics for FAM200A Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for FAM200A Gene

Start:
99,546,300 bp from pter
End:
99,558,536 bp from pter
Size:
12,237 bases
Orientation:
Minus strand

Genomic View for FAM200A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM200A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM200A Gene

No data available for Regulatory Elements for FAM200A Gene

Proteins for FAM200A Gene

  • Protein details for FAM200A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TCP9-F200A_HUMAN
    Recommended name:
    Protein FAM200A
    Protein Accession:
    Q8TCP9
    Secondary Accessions:
    • A4D293
    • A8K3V9
    • B2RD92
    • C9J6A8
    • D6W5T2
    • Q8N9P3

    Protein attributes for FAM200A Gene

    Size:
    573 amino acids
    Molecular mass:
    66276 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM200A Gene

Proteomics data for FAM200A Gene at MOPED

Post-translational modifications for FAM200A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM200A Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FAM200A Gene

Domains for FAM200A Gene

Protein Domains for FAM200A Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM200A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8TCP9

UniProtKB/Swiss-Prot:

F200A_HUMAN :
  • Q8TCP9
Family:
  • Belongs to the FAM200 family.
genes like me logo Genes that share domains with FAM200A: view

No data available for Gene Families for FAM200A Gene

Function for FAM200A Gene

Gene Ontology (GO) - Molecular Function for FAM200A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with FAM200A: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FAM200A

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM200A Gene

Localization for FAM200A Gene

Subcellular locations from UniProtKB/Swiss-Prot for FAM200A Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM200A Gene COMPARTMENTS Subcellular localization image for FAM200A gene
Compartment Confidence
cytosol 1
nucleus 1

Gene Ontology (GO) - Cellular Components for FAM200A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with FAM200A: view

Pathways for FAM200A Gene

SuperPathways for FAM200A Gene

No Data Available

Interacting Proteins for FAM200A Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000411372%0d%0a9606.ENSP00000253363%0d%0a
Selected Interacting proteins: ENSP00000411372 Q8TCP9-F200A_HUMAN for FAM200A Gene via STRING UniProtKB

Gene Ontology (GO) - Biological Process for FAM200A Gene

None

No data available for Pathways by source for FAM200A Gene

Transcripts for FAM200A Gene

mRNA/cDNA for FAM200A Gene

Unigene Clusters for FAM200A Gene

Family with sequence similarity 200, member A:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FAM200A

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM200A Gene

No ASD Table

Relevant External Links for FAM200A Gene

GeneLoc Exon Structure for
FAM200A
ECgene alternative splicing isoforms for
FAM200A

Expression for FAM200A Gene

mRNA expression in normal human tissues for FAM200A Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for FAM200A Gene

SOURCE GeneReport for Unigene cluster for FAM200A Gene Hs.596587

genes like me logo Genes that share expressions with FAM200A: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for FAM200A Gene

Orthologs for FAM200A Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM200A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM200A 35
  • 99.36 (n)
  • 99.3 (a)
FAM200A 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FAM200A 35
  • 88.37 (n)
  • 88.13 (a)
dog
(Canis familiaris)
Mammalia FAM200A 35
  • 89.71 (n)
  • 90.07 (a)
FAM200A 36
  • 90 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 2410018M08Rik 36
  • 25 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 24 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii CR388095.1 36
  • 31 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 22 (a)
ManyToMany
Species with no ortholog for FAM200A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM200A Gene

ENSEMBL:
Gene Tree for FAM200A (if available)
TreeFam:
Gene Tree for FAM200A (if available)

Paralogs for FAM200A Gene

Paralogs for FAM200A Gene

Selected SIMAP similar genes for FAM200A Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with FAM200A: view

Variants for FAM200A Gene

Sequence variations from dbSNP and Humsavar for FAM200A Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs1273681 -- 99,550,119(-) aaaaa(A/G)GGGGG intron-variant
rs2158805 -- 99,553,070(-) TATAT(A/G)TGTGT upstream-variant-2KB, intron-variant
rs2404491 -- 99,545,842(+) tcttc(A/C)aaaaa downstream-variant-500B
rs4419749 -- 99,555,077(+) aagtt(C/T)tagcc intron-variant
rs4524721 -- 99,556,286(+) TGCGG(A/C)CTACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM200A Gene

Variant ID Type Subtype PubMed ID
esv2507396 CNV Insertion 19546169

Relevant External Links for FAM200A Gene

HapMap Linkage Disequilibrium report
FAM200A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM200A Gene

Disorders for FAM200A Gene

No disorders were found for FAM200A Gene.

No data available for UniProtKB/Swiss-Prot for FAM200A Gene

Publications for FAM200A Gene

  1. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Interspersed repeats and other mementos of transposable elements in mammalian genomes. (PMID: 10607616) Smit A.F.A. (Curr. Opin. Genet. Dev. 1999) 2 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for FAM200A Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate FAM200A
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FAM200A
    • Block miRNA regulation of FAM200A using miScript Target Protectors

    Sources for FAM200A Gene

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