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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

FAM19A4 Gene

protein-coding GIFtS: 45
GCID: GC03M068864

family with sequence similarity 19 (chemokine (C-C motif)-like),...

Search for FAM19A4
in

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Family With Sequence Similarity 19 (Chemokine (C-C Motif)-Like), Member A4¹ ²
TAFA-4¹ ²
Chemokine-Like Protein TAFA-4² ³
TAFA4² ³
Protein FAM19A4²

External Ids:	HGNC: 21591¹	Entrez Gene: 151647²	Ensembl: ENSG00000163377⁷	UniProtKB: Q96LR4³

Export aliases for FAM19A4 gene to outside databases

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for FAM19A4:

This gene is a member of the TAFA family which is composed of five highly homologous genes that encode small secreted

proteins. These proteins contain conserved cysteine residues at fixed positions, and are distantly related to

MIP-1alpha, a member of the CC-chemokine family. The TAFA proteins are predominantly expressed in specific regions of

the brain, and are postulated to function as brain-specific chemokines or neurokines, that act as regulators of immune

and nervous cells. Alternatively spliced transcript variants have been observed for this gene. (provided by RefSeq,

Nov 2011)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000003.11 NC_018914.1 NT_022459.15

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the FAM19A4 gene promoter:
STAT1 SREBP-1c STAT1beta STAT1alpha Evi-1 SREBP-1b CP2 SREBP-1a POU2F1 POU2F1a
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: FAM19A4 promoter sequence

Search SABiosciences Chromatin IP Primers for FAM19A4

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FAM19A4

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3p14.1 Ensembl cytogenetic band: 3p14.1 HGNC cytogenetic band: 3p14.1

FAM19A4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
FAM19A4 gene location

GeneLoc information about chromosome 3 GeneLoc Exon Structure

GeneLoc location for GC03M068864: view genomic region (about GC identifiers)

Start:	68,780,917 bp from pter	End:	68,981,761 bp from pter
Size:	200,845 bases	Orientation:	minus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: F19A4_HUMAN, Q96LR4 (See protein sequence)

Recommended Name: Protein FAM19A4 precursor

Size: 140 amino acids; 15682 Da

Subcellular location: Secreted

Secondary accessions: A8MVT2

Explore the universe of human proteins at neXtProt for FAM19A4: NX_Q96LR4

FAM19A4 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins (2 alternative transcripts):

NP_001005527.1 NP_872328.1

ENSEMBL proteins:

ENSP00000295569 ENSP00000419439

Human Recombinant Protein Products:

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Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005576	extracellular region	IEA	--

FAM19A4 for ontologies About GeneDecksing

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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

FAM19A4 for domains About GeneDecksing

1 InterPro domain/family:

IPR020350 Chemokine-like_FAM19A2

Graphical View of Domain Structure for InterPro Entry Q96LR4

ProtoNet protein and cluster: Q96LR4

UniProtKB/Swiss-Prot: F19A4_HUMAN, Q96LR4

Similarity: Belongs to the FAM19/TAFA family

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for FAM19A4

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
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About This Section

REFSEQ mRNAs for FAM19A4 gene (2 alternative transcripts):

NM_001005527.2 NM_182522.4

Unigene Cluster for FAM19A4:

Family with sequence similarity 19 (chemokine (C-C motif)-like), member A4

Hs.187873 [show with all ESTs]

Unigene Representative Sequence: NM_182522

2 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000295569(uc021xag.1 uc021xah.1) ENST00000495737

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Additional cDNA sequence:

AK057890.1 AY325117.1 BC031566.1

2 DOTS entries:

DT.100735440 DT.207466

15 AceView cDNA sequences:

AW085118 BC031566 BI599941 NM_182522 BF793645 AA757457 BI550286 AA991765

AK057890 AY325117 AA778476 BF791716 BM471706 BI552898 AA778490

GeneLoc Exon Structure

2 Alternative Splicing Database (ASD) splice patterns (SP) for FAM19A4 About this scheme

ExUns:	1a	·	1b	·	1c	^	2	^	3	^	4	^	5	^	6
SP1:
SP2:					-

ECgene alternative splicing isoforms for FAM19A4

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

FAM19A4 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: CGGAAACGTA

About this image

FAM19A4 expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

6 LifeMap In Vivo Development Anatomical Compartments/Cells

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Eye

Inner Nuclear Layer

Type1 Off Cone Bipolar Cells

Bipolar, Retina

Spinal Cord

Spinal Ventral Columns

Ventral Spinal Cord Progenitor Cells

Motor Neurons

Bone

Brain

Neural Tube

Spinal Ventral Columns

Spinal Cord

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

See FAM19A4 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for FAM19A4

SOURCE GeneReport for Unigene cluster: Hs.187873

UniProtKB/Swiss-Prot: F19A4_HUMAN, Q96LR4

Tissue specificity: Brain-specific

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In Situ
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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for FAM19A4 gene from 4/10 species (see all 10) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
chicken (Gallus gallus)	Aves	FAM19A4¹	family with sequence similarity 19 (chemokine (C-C more	81.14(n) 91.92(a)		771511 XM_001234785.2 XP_001234786.2
lizard (Anolis carolinensis)	Reptilia	FAM19A4⁶	--	93(a)	1 ↔ 1	2(182620192-182638291)
tropical clawed frog (Xenopus tropicalis)	Amphibia	AL861103.2²	--	73.23(n)		AL861103.2
zebrafish (Danio rerio)	Actinopterygii	fam19a4b¹	family with sequence similarity 19 (chemokine (C-C more	71.31(n) 76.23(a)		768127 NM_001077273.1 NP_001070741.1

ENSEMBL Gene Tree for FAM19A4 (if available)
TreeFam Gene Tree for FAM19A4 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for FAM19A4 gene

FAM19A1² FAM19A3² FAM19A2² FAM19A5²

4 SIMAP similar genes for FAM19A4 using alignment to 2 protein entries: F19A4_HUMAN (see all proteins):

FAM19A3 FAM19A2 FAM19A1 FAM19A5

FAM19A4 for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 3 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs180938702^1,2		--	68780451(+)	`CATTTC/TAGGCC`	2	--	ds500¹		0	--	--	--	--
rs144754991^1,2		--	68780509(+)	`TGGCAC/GCTTTG`	2	--	ds500¹		0	--	--	--	--
rs34985076^1,2	C,F,	--	68780610(+)	`CTGTTG/TCATGT`	2	--	ds500¹		2		NA	4
rs199629892^1,2		--	68780660(+)	`ATATA-/TATG TATAT`	2	--	ds500¹		0	--	--	--	--
rs200567177^1,2		--	68780671(+)	`TATAT-/ATTAAC`	2	--	ds500¹		0	--	--	--	--
rs78306127^1,2		--	68780683(+)	`CAATAC/TTAAAG`	2	--	ds500¹		0	--	--	--	--
rs12630480^1,2	C,F,H,	--	68780703(+)	`TATGCG/ATAAAA`	2	--	ds500¹		18		NS EA NA CSA WA	2340
rs59539587^1,2	C,F,	--	68780713(+)	`ACATCA/TTGAGT`	2	--	ds500¹		4		WA CSA EA	242
rs190763664^1,2		--	68780766(+)	`AGCTAC/TCCAAA`	2	--	ds500¹		0	--	--	--	--
rs6771627^1,2	C,F,A,H,	--	68780937(+)	`GAATTT/ATTTTA`	2	--	ut3¹		7		NS EA NA WA	534

HapMap Linkage Disequilibrium report for FAM19A4 (68780917 - 68981761 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 12 variations for FAM19A4
5 CNVs: 79789 2461 98343 91347 79790
7 Indels: 27351 40536 42694 12307 40537 62064 46435

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

FAM19A4 for disorders About MalaCards

FAM19A4 for disorders About GeneDecksing

Human Genome Epidemiology (HuGE) Navigator: FAM19A4 (3 documents)

Export disorders for FAM19A4 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for FAM19A4 gene integrated from 9 sources:
(articles sorted by number of sources associating them with FAM19A4)

Utopia: connect your pdf to the dynamic
world of online information

TAFA: a novel secreted family with conserved cysteine residues and restricted expression in the brain. (PubMed id 15028294)^{1, 2, 3} Tom Tang Y....Rupp F. (2004)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S....Malek J. (2004)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{1, 2} Ota T.... Sugano S. (2004)
Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)¹ OlA!h J....OvA!di J. (2011)
Assessment of a polymorphism of SDK1 with hypertensio n in Japanese Individuals. (PubMed id 19851296)¹ Oguri M....Yamada Y. (2010)
Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)¹ Rose J.E....Uhl G.R. (2010)
Association of genetic variants with hemorrhagic stro ke in Japanese individuals. (PubMed id 20198315)¹ Yoshida T....Yamada Y. (2010)
The DNA sequence, annotation and analysis of human chromosome 3. (PubMed id 16641997)² Muzny D.M....Gibbs R.A. (2006)
Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)¹ Kimura K.... Sugano S. (2006)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 151647	HGNC: 21591	AceView: TAFA4	Ensembl:ENSG00000163377	euGenes: HUgn151647
ECgene: FAM19A4	H-InvDB: FAM19A4

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for FAM19A4	Pharmacogenomics, SNPs, Pathways

Intellectual Property for FAM19A4 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for FAM19A4 gene:
Search GeneIP for patents involving FAM19A4

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
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About This Section


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	GenScript Custom Purified and Recombinant Proteins Services for FAM19A4		GenScript cDNA clones with any tag delivered in your preferred vector for FAM19A4
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	Regulatory tfbs in FAM19A4 promoter
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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM19A4

	SwitchGear 3'UTR luciferase reporter plasmids for FAM19A4
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ThermoFisher Antibodies for FAM19A4

Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat FAM19A4

GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 27 Apr 2013

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Category			VWF (GIFTS: 73) von Willebrand factor
GIFtS Group

The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

The GeneCards Human Gene Database

Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

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FAM19A4 Gene

family with sequence similarity 19 (chemokine (C-C motif)-like),...

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FAM19A4 Gene

family with sequence similarity 19 (chemokine (C-C motif)-like),...

Aliasesfor FAM19A4 gene

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for FAM19A4 gene

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for FAM19A4 gene

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for FAM19A4 gene

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for FAM19A4 gene

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for FAM19A4 gene

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for FAM19A4 gene

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for FAM19A4 gene

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for FAM19A4 gene

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for FAM19A4 gene

Expression
for FAM19A4 gene

Orthologs
for FAM19A4 gene

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for FAM19A4 gene

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for FAM19A4 gene

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for FAM19A4 gene

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for FAM19A4 gene

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for FAM19A4 gene