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Aliases for FAM199X Gene

Aliases for FAM199X Gene

  • Family With Sequence Similarity 199, X-Linked 2 3
  • CXorf39 3 4
  • Chromosome X Open Reading Frame 39 2
  • Protein FAM199X 3

External Ids for FAM199X Gene

Previous HGNC Symbols for FAM199X Gene

  • CXorf39

Previous GeneCards Identifiers for FAM199X Gene

  • GC0XP103411
  • GC0XP093038

Summaries for FAM199X Gene

GeneCards Summary for FAM199X Gene

FAM199X (Family With Sequence Similarity 199, X-Linked) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM199X Gene

Genomics for FAM199X Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for FAM199X Gene

Start:
104,166,475 bp from pter
End:
104,195,902 bp from pter
Size:
29,428 bases
Orientation:
Plus strand

Genomic View for FAM199X Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM199X Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM199X Gene

No data available for Regulatory Elements for FAM199X Gene

Proteins for FAM199X Gene

  • Protein details for FAM199X Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6PEV8-F199X_HUMAN
    Recommended name:
    Protein FAM199X
    Protein Accession:
    Q6PEV8
    Secondary Accessions:
    • Q8WVP6
    • Q96AV3

    Protein attributes for FAM199X Gene

    Size:
    388 amino acids
    Molecular mass:
    42801 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for FAM199X Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FAM199X Gene

Proteomics data for FAM199X Gene at MOPED

Post-translational modifications for FAM199X Gene

  • Ubiquitination at Lys13 and Lys199
  • Modification sites at PhosphoSitePlus

Other Protein References for FAM199X Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FAM199X Gene

Domains for FAM199X Gene

Protein Domains for FAM199X Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM199X Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6PEV8

UniProtKB/Swiss-Prot:

F199X_HUMAN :
  • Q6PEV8
Family:
  • Belongs to the FAM199 family.
genes like me logo Genes that share domains with FAM199X: view

No data available for Gene Families for FAM199X Gene

Function for FAM199X Gene

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FAM199X

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for FAM199X Gene

Localization for FAM199X Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM199X Gene COMPARTMENTS Subcellular localization image for FAM199X gene
Compartment Confidence
nucleus 3
cytosol 2
golgi apparatus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM199X Gene

Pathways for FAM199X Gene

SuperPathways for FAM199X Gene

No Data Available

Interacting Proteins for FAM199X Gene

Gene Ontology (GO) - Biological Process for FAM199X Gene

None

No data available for Pathways by source for FAM199X Gene

Transcripts for FAM199X Gene

mRNA/cDNA for FAM199X Gene

Unigene Clusters for FAM199X Gene

Family with sequence similarity 199, X-linked:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FAM199X

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for FAM199X
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM199X Gene

ExUns: 1 ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b
SP1: -
SP2: - -
SP3:

Relevant External Links for FAM199X Gene

GeneLoc Exon Structure for
FAM199X
ECgene alternative splicing isoforms for
FAM199X

Expression for FAM199X Gene

mRNA expression in normal human tissues for FAM199X Gene

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for FAM199X Gene

SOURCE GeneReport for Unigene cluster for FAM199X Gene Hs.496535

genes like me logo Genes that share expressions with FAM199X: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for FAM199X Gene

Orthologs for FAM199X Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM199X Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM199X 35
  • 99.91 (n)
  • 100 (a)
FAM199X 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FAM199X 35
  • 95.45 (n)
  • 98.45 (a)
FAM199X 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FAM199X 35
  • 95.88 (n)
  • 98.97 (a)
FAM199X 36
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fam199x 35
  • 92.87 (n)
  • 97.68 (a)
Fam199x 16
Fam199x 36
  • 98 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia FAM199X 36
  • 92 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FAM199X 36
  • 97 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC679168 35
  • 91.71 (n)
  • 96.63 (a)
chicken
(Gallus gallus)
Aves FAM199X 35
  • 82.48 (n)
  • 91.69 (a)
FAM199X 36
  • 90 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FAM199X 36
  • 89 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia fam199x 35
  • 79.42 (n)
  • 89.76 (a)
Str.13994 35
zebrafish
(Danio rerio)
Actinopterygii fam199x 35
  • 73.79 (n)
  • 84.38 (a)
fam199x 36
  • 84 (a)
OneToOne
Species with no ortholog for FAM199X:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM199X Gene

ENSEMBL:
Gene Tree for FAM199X (if available)
TreeFam:
Gene Tree for FAM199X (if available)

Paralogs for FAM199X Gene

Selected SIMAP similar genes for FAM199X Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM199X: view

No data available for Paralogs for FAM199X Gene

Variants for FAM199X Gene

Sequence variations from dbSNP and Humsavar for FAM199X Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs15464 -- 104,195,825(+) ATTAA(G/T)CTTGT utr-variant-3-prime
rs25534 -- 104,193,585(+) ATTGA(-/TGG)AGGGT utr-variant-3-prime
rs4287068 -- 104,171,104(+) TCAGG(C/T)CCACC intron-variant
rs4826925 -- 104,181,947(+) ATTCA(C/G)TTATC intron-variant
rs4826928 -- 104,185,089(+) tttta(A/G)agaga intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM199X Gene

Variant ID Type Subtype PubMed ID
dgv2459e1 CNV Complex 17122850

Relevant External Links for FAM199X Gene

HapMap Linkage Disequilibrium report
FAM199X

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM199X Gene

Disorders for FAM199X Gene

No disorders were found for FAM199X Gene.

No data available for UniProtKB/Swiss-Prot for FAM199X Gene

Publications for FAM199X Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4
  3. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3
  4. Ubiquitin-mediated proteolysis of HuR by heat shock. (PMID: 19322201) Abdelmohsen K. … Gorospe M. (EMBO J. 2009) 3
  5. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PMID: 21890473) Wagner S.A. … Choudhary C. (Mol. Cell Proteomics 2011) 3

Products for FAM199X Gene

Sources for FAM199X Gene

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