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Aliases for FAM196B Gene

Aliases for FAM196B Gene

  • Family With Sequence Similarity 196 Member B 2 3 5
  • C5orf57 3 4
  • Family With Sequence Similarity 196, Member B 2
  • Chromosome 5 Open Reading Frame 57 2
  • Protein FAM196B 3

External Ids for FAM196B Gene

Previous HGNC Symbols for FAM196B Gene

  • C5orf57

Previous GeneCards Identifiers for FAM196B Gene

  • GC05M169225
  • GC05M164388

Summaries for FAM196B Gene

GeneCards Summary for FAM196B Gene

FAM196B (Family With Sequence Similarity 196 Member B) is a Protein Coding gene. An important paralog of this gene is FAM196A.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM196B Gene

Genomics for FAM196B Gene

Regulatory Elements for FAM196B Gene

Enhancers for FAM196B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F169975 1.2 FANTOM5 ENCODE 30.8 +2.2 2208 5.5 SIN3A ZNF2 RAD21 ZNF366 SCRT2 HSF1 FOS ZNF263 CEBPB JUNB FAM196B ENSG00000253269
GH05F169969 1.3 FANTOM5 Ensembl ENCODE 28.4 +9.7 9736 2.8 TAF1 JUN BHLHE40 USF2 SIN3A MAX ATF2 NR2F2 ZNF23 RAD51 FAM196B ENSG00000253269
GH05F169953 0.4 Ensembl 28 +27.1 27140 0.4 MNT FAM196B ENSG00000253269
GH05F169944 0.8 Ensembl ENCODE 10.3 +34.8 34843 2.3 ZNF664 ZNF146 POLR2A SCRT2 ZNF24 FOXP2 ZIC2 FAM196B ENSG00000253269
GH05F169881 0.7 FANTOM5 Ensembl 10.1 +98.9 98936 0.8 NFE2 FAM196B DOCK2 LCP2 ENSG00000253269
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM196B on UCSC Golden Path with GeneCards custom track

Promoters for FAM196B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001296351 440 1001 CTCF TEAD4 SIN3A ZNF2 RAD21 ZNF101 ZNF664 GATA3 ZNF366 SCRT2
ENSR00001876379 1240 201 CBX2

Genomic Location for FAM196B Gene

Chromosome:
5
Start:
169,861,291 bp from pter
End:
169,980,740 bp from pter
Size:
119,450 bases
Orientation:
Minus strand

Genomic View for FAM196B Gene

Genes around FAM196B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM196B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM196B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM196B Gene

Proteins for FAM196B Gene

  • Protein details for FAM196B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NMK8-F196B_HUMAN
    Recommended name:
    Protein FAM196B
    Protein Accession:
    A6NMK8

    Protein attributes for FAM196B Gene

    Size:
    535 amino acids
    Molecular mass:
    59204 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM196B Gene

Post-translational modifications for FAM196B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM196B Gene

No data available for DME Specific Peptides for FAM196B Gene

Domains & Families for FAM196B Gene

Protein Domains for FAM196B Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM196B Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A6NMK8

UniProtKB/Swiss-Prot:

F196B_HUMAN :
  • Belongs to the FAM196 family.
Family:
  • Belongs to the FAM196 family.
genes like me logo Genes that share domains with FAM196B: view

No data available for Gene Families for FAM196B Gene

Function for FAM196B Gene

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FAM196B Gene

Localization for FAM196B Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FAM196B gene
Compartment Confidence
nucleus 3

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM196B Gene

Pathways & Interactions for FAM196B Gene

SuperPathways for FAM196B Gene

No Data Available

Interacting Proteins for FAM196B Gene

Gene Ontology (GO) - Biological Process for FAM196B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM196B Gene

Transcripts for FAM196B Gene

mRNA/cDNA for FAM196B Gene

(4) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM196B Gene

Family with sequence similarity 196, member B:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM196B Gene

No ASD Table

Relevant External Links for FAM196B Gene

GeneLoc Exon Structure for
FAM196B
ECgene alternative splicing isoforms for
FAM196B

Expression for FAM196B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM196B Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FAM196B Gene



NURSA nuclear receptor signaling pathways regulating expression of FAM196B Gene:

FAM196B

SOURCE GeneReport for Unigene cluster for FAM196B Gene:

Hs.721917
genes like me logo Genes that share expression patterns with FAM196B: view

Primer Products

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FAM196B Gene

Orthologs for FAM196B Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM196B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM196B 34 35
  • 99.19 (n)
dog
(Canis familiaris)
Mammalia FAM196B 34 35
  • 88.16 (n)
cow
(Bos Taurus)
Mammalia FAM196B 34 35
  • 85.3 (n)
mouse
(Mus musculus)
Mammalia Fam196b 34 16 35
  • 82.06 (n)
rat
(Rattus norvegicus)
Mammalia Fam196b 34
  • 81.18 (n)
oppossum
(Monodelphis domestica)
Mammalia FAM196B 35
  • 70 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FAM196B 35
  • 60 (a)
OneToOne
chicken
(Gallus gallus)
Aves FAM196B 34 35
  • 58.27 (n)
lizard
(Anolis carolinensis)
Reptilia FAM196B 35
  • 47 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC101734510 34
  • 71.68 (n)
zebrafish
(Danio rerio)
Actinopterygii FAM196B 35
  • 17 (a)
OneToOne
Species where no ortholog for FAM196B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM196B Gene

ENSEMBL:
Gene Tree for FAM196B (if available)
TreeFam:
Gene Tree for FAM196B (if available)

Paralogs for FAM196B Gene

Paralogs for FAM196B Gene

genes like me logo Genes that share paralogs with FAM196B: view

Variants for FAM196B Gene

Sequence variations from dbSNP and Humsavar for FAM196B Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs10035370 -- 169,923,485(+) TGGGc(A/G)cacac intron-variant, utr-variant-3-prime
rs10041330 -- 169,976,998(+) ACAGC(A/G)GGATG intron-variant
rs10053333 -- 169,901,625(+) atgat(A/G)agaac intron-variant
rs10054166 -- 169,977,543(+) AGGCA(A/G)CTGAG intron-variant
rs10055680 -- 169,963,219(+) TCCAC(A/G)TGGGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM196B Gene

Variant ID Type Subtype PubMed ID
esv2731060 CNV deletion 23290073
esv3566992 CNV deletion 23714750
esv3607554 CNV loss 21293372
esv3607558 CNV loss 21293372
esv3607559 CNV gain 21293372
esv3607560 CNV loss 21293372
esv988430 CNV insertion 20482838
nsv328128 CNV deletion 16902084
nsv474386 CNV novel sequence insertion 20440878
nsv600259 CNV loss 21841781
nsv969011 CNV duplication 23825009

Variation tolerance for FAM196B Gene

Gene Damage Index Score: 6.13; 75.62% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FAM196B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM196B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM196B Gene

Disorders for FAM196B Gene

Relevant External Links for FAM196B

Genetic Association Database (GAD)
FAM196B
Human Genome Epidemiology (HuGE) Navigator
FAM196B
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM196B

No disorders were found for FAM196B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM196B Gene

Publications for FAM196B Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  3. The DNA sequence and comparative analysis of human chromosome 5. (PMID: 15372022) Schmutz J. … Rubin E.M. (Nature 2004) 3 4 64
  4. Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris. (PMID: 24927181) Navarini A.A. … Barker J.N. (Nat Commun 2014) 3 64
  5. A second-generation genomewide screen for asthma-susceptibility alleles in a founder population. (PMID: 11022011) Ober C. … Cox N.J. (Am. J. Hum. Genet. 2000) 46 64

Products for FAM196B Gene

Sources for FAM196B Gene

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