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Aliases for FAM189B Gene

Aliases for FAM189B Gene

  • Family With Sequence Similarity 189 Member B 2 3 5
  • C1orf2 3 4
  • COTE1 3 4
  • Family With Sequence Similarity 189, Member B 2
  • Chromosome 1 Open Reading Frame 2 2
  • Protein FAM189B 3
  • Protein COTE1 4

External Ids for FAM189B Gene

Previous HGNC Symbols for FAM189B Gene

  • C1orf2

Previous GeneCards Identifiers for FAM189B Gene

  • GC01M153484
  • GC01M155216
  • GC01M126579

Summaries for FAM189B Gene

Entrez Gene Summary for FAM189B Gene

  • This gene is located near the gene for the lysosomal enzyme glucosylceramidase; a deficiency in this enzyme is associated with Gaucher disease. The encoded protein has been identified as a potential binding partner of a WW domain-containing protein which is involved in apoptosis and tumor suppression. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2010]

GeneCards Summary for FAM189B Gene

FAM189B (Family With Sequence Similarity 189 Member B) is a Protein Coding gene. GO annotations related to this gene include WW domain binding. An important paralog of this gene is FAM189A1.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM189B Gene

Genomics for FAM189B Gene

Regulatory Elements for FAM189B Gene

Enhancers for FAM189B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G155206 1.4 ENCODE dbSUPER 11.8 +46.8 46797 4.5 HDGF PKNOX1 FOXA2 CREB3L1 ARNT AGO1 SIN3A ARID4B DMAP1 ZNF2 THBS3 FAM189B SCAMP3 TRIM46 KRTCAP2 POU5F1P4 MTX1 LOC105371450
GH01G155650 1.5 FANTOM5 Ensembl ENCODE 10.7 -396.1 -396113 2.3 TBP NFIB INSM2 SIN3A BMI1 ZNF366 SCRT2 FOS DEK SP3 SCAMP3 FAM189B ASH1L RUSC1 RUSC1-AS1 MIR555 DAP3 LOC100419799 PIR48789
GH01G155307 1.2 ENCODE 12.1 -53.6 -53618 3.8 MLX CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC TBX21 GBA HCN3 SCAMP3 FAM189B MSTO2P CHRNB2 ASH1L MIR555 BGLAP ASH1L-AS1
GH01G155231 1.1 Ensembl ENCODE dbSUPER 12.7 +23.3 23253 1.7 ARID1B TCF12 PKNOX1 POLR2A GLIS1 TAL1 NR2C1 SPI1 GBA FAM189B SCAMP3 THBS3 MTX1 MUC1 ENSG00000231064 KRTCAP2 TRIM46 FDPS
GH01G155319 1.1 ENCODE 11.4 -67.6 -67644 6.3 HDGF PKNOX1 AGO1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 MSTO2P LOC101928120 PYGO2 DPM3 SCAMP3 FAM189B KIAA0907 GBA MIR555 ASH1L
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM189B on UCSC Golden Path with GeneCards custom track

Promoters for FAM189B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000014052 83 1201 HDGF CREB3L1 AGO1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766

Genomic Location for FAM189B Gene

Chromosome:
1
Start:
155,247,205 bp from pter
End:
155,255,483 bp from pter
Size:
8,279 bases
Orientation:
Minus strand

Genomic View for FAM189B Gene

Genes around FAM189B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM189B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM189B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM189B Gene

Proteins for FAM189B Gene

  • Protein details for FAM189B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P81408-F189B_HUMAN
    Recommended name:
    Protein FAM189B
    Protein Accession:
    P81408
    Secondary Accessions:
    • B1AVS5
    • Q8IXL3
    • Q9BR66

    Protein attributes for FAM189B Gene

    Size:
    668 amino acids
    Molecular mass:
    71355 Da
    Quaternary structure:
    • May interact with WWOX.

    Alternative splice isoforms for FAM189B Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FAM189B Gene

Post-translational modifications for FAM189B Gene

  • Ubiquitination at isoforms=3, 4, 2579
  • Glycosylation at Asn160
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for FAM189B Gene

Domains & Families for FAM189B Gene

Protein Domains for FAM189B Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM189B Gene

Graphical View of Domain Structure for InterPro Entry

P81408

UniProtKB/Swiss-Prot:

F189B_HUMAN :
  • Belongs to the FAM189 family.
Family:
  • Belongs to the FAM189 family.
genes like me logo Genes that share domains with FAM189B: view

No data available for Gene Families for FAM189B Gene

Function for FAM189B Gene

Gene Ontology (GO) - Molecular Function for FAM189B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 15064722
GO:0050699 WW domain binding IPI 15064722
genes like me logo Genes that share ontologies with FAM189B: view

Phenotypes for FAM189B Gene

genes like me logo Genes that share phenotypes with FAM189B: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FAM189B Gene

Localization for FAM189B Gene

Subcellular locations from UniProtKB/Swiss-Prot for FAM189B Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FAM189B gene
Compartment Confidence
plasma membrane 4
nucleus 2
lysosome 1

Gene Ontology (GO) - Cellular Components for FAM189B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with FAM189B: view

Pathways & Interactions for FAM189B Gene

SuperPathways for FAM189B Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM189B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with FAM189B: view

No data available for Pathways by source and SIGNOR curated interactions for FAM189B Gene

Drugs & Compounds for FAM189B Gene

No Compound Related Data Available

Transcripts for FAM189B Gene

Unigene Clusters for FAM189B Gene

Family with sequence similarity 189, member B:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM189B Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9a · 9b ^ 10a · 10b · 10c ^ 11 ^ 12 ^ 13a · 13b ^ 14a · 14b · 14c
SP1: - -
SP2: - - - - - -
SP3:
SP4: -
SP5: - -
SP6: -
SP7: - - - - - - - - - - - - - -
SP8: - - - -
SP9: -
SP10: - - - -
SP11: -

Relevant External Links for FAM189B Gene

GeneLoc Exon Structure for
FAM189B
ECgene alternative splicing isoforms for
FAM189B

Expression for FAM189B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM189B Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

NURSA nuclear receptor signaling pathways regulating expression of FAM189B Gene:

FAM189B

SOURCE GeneReport for Unigene cluster for FAM189B Gene:

Hs.348308

mRNA Expression by UniProt/SwissProt for FAM189B Gene:

P81408-F189B_HUMAN
Tissue specificity: Widely expressed.

Evidence on tissue expression from TISSUES for FAM189B Gene

  • Nervous system(4.5)
  • Liver(4.3)
  • Pancreas(4.1)
genes like me logo Genes that share expression patterns with FAM189B: view

Primer Products

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM189B Gene

Orthologs for FAM189B Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM189B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM189B 34 35
  • 99.65 (n)
cow
(Bos Taurus)
Mammalia FAM189B 34 35
  • 91.47 (n)
dog
(Canis familiaris)
Mammalia FAM189B 34 35
  • 90.62 (n)
mouse
(Mus musculus)
Mammalia Fam189b 34 16 35
  • 88.62 (n)
rat
(Rattus norvegicus)
Mammalia Fam189b 34
  • 87.97 (n)
oppossum
(Monodelphis domestica)
Mammalia FAM189B 35
  • 87 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii LOC101882768 34
  • 57.65 (n)
Species where no ortholog for FAM189B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM189B Gene

ENSEMBL:
Gene Tree for FAM189B (if available)
TreeFam:
Gene Tree for FAM189B (if available)

Paralogs for FAM189B Gene

Paralogs for FAM189B Gene

(2) SIMAP similar genes for FAM189B Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with FAM189B: view

Variants for FAM189B Gene

Sequence variations from dbSNP and Humsavar for FAM189B Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
VAR_035684 A breast cancer sample
rs2072648 --

Structural Variations from Database of Genomic Variants (DGV) for FAM189B Gene

Variant ID Type Subtype PubMed ID
dgv3n68 CNV loss 17160897
esv2758971 CNV gain 17122850
esv28935 CNV gain 19812545
esv33869 CNV loss 17666407
nsv1008748 CNV loss 25217958
nsv1011773 CNV gain 25217958
nsv470741 CNV loss 18288195
nsv831636 CNV loss 17160897

Variation tolerance for FAM189B Gene

Residual Variation Intolerance Score: 73.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.79; 66.82% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FAM189B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM189B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM189B Gene

Disorders for FAM189B Gene

Relevant External Links for FAM189B

Genetic Association Database (GAD)
FAM189B
Human Genome Epidemiology (HuGE) Navigator
FAM189B
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM189B

No disorders were found for FAM189B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM189B Gene

Publications for FAM189B Gene

  1. WWOX binds the specific proline-rich ligand PPXY: identification of candidate interacting proteins. (PMID: 15064722) Ludes-Meyers J.H. … Aldaz C.M. (Oncogene 2004) 2 3 4 64
  2. Identification of three additional genes contiguous to the glucocerebrosidase locus on chromosome 1q21: implications for Gaucher disease. (PMID: 9331372) Winfield S.L. … Sidransky E. (Genome Res. 1997) 2 3 4 64
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  5. An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome. (PMID: 24275569) Bian Y. … Zou H. (J. Proteomics 2014) 4 64

Products for FAM189B Gene

Sources for FAM189B Gene

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