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Aliases for FAM188B2 Gene

Aliases for FAM188B2 Gene

  • Family With Sequence Similarity 188, Member B2 2 3
  • C3orf76 3 4
  • Chromosome 3 Open Reading Frame 76 2
  • Putative UPF0526 Protein B 3
  • CLRN1 3

External Ids for FAM188B2 Gene

Previous Symbols for FAM188B2 Gene

  • C3orf76

Summaries for FAM188B2 Gene

GeneCards Summary for FAM188B2 Gene

FAM188B2 (Family With Sequence Similarity 188, Member B2) is a Protein Coding gene. An important paralog of this gene is FAM188A.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM188B2 Gene

Genomics for FAM188B2 Gene

Genomic Location for FAM188B2 Gene

Start:
150,871,045 bp from pter
End:
150,891,060 bp from pter
Size:
20,016 bases
Orientation:
Minus strand

Genomic View for FAM188B2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM188B2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM188B2 Gene

No data available for Regulatory Elements for FAM188B2 Gene

Proteins for FAM188B2 Gene

  • Protein details for FAM188B2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MYZ0-F1882_HUMAN
    Recommended name:
    Protein FAM188B2
    Protein Accession:
    A8MYZ0
    Secondary Accessions:

    Protein attributes for FAM188B2 Gene

    Size:
    360 amino acids
    Molecular mass:
    41070 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM188B2 Gene

Proteomics data for FAM188B2 Gene at MOPED

Post-translational modifications for FAM188B2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM188B2 Gene

Domains for FAM188B2 Gene

Protein Domains for FAM188B2 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

F1882_HUMAN
Family:
  • Belongs to the FAM188 family.:
    • A8MYZ0
genes like me logo Genes that share domains with FAM188B2: view

No data available for Gene Families for FAM188B2 Gene

Function for FAM188B2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM188B2 Gene

Localization for FAM188B2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM188B2 Gene COMPARTMENTS Subcellular localization image for FAM188B2 gene
Compartment Confidence
mitochondrion 2
cytosol 1
golgi apparatus 1
peroxisome 1

No data available for Gene Ontology (GO) - Cellular Components for FAM188B2 Gene

Pathways for FAM188B2 Gene

SuperPathways for FAM188B2 Gene

No Data Available

Interacting Proteins for FAM188B2 Gene

Gene Ontology (GO) - Biological Process for FAM188B2 Gene

None

No data available for Pathways by source for FAM188B2 Gene

Transcripts for FAM188B2 Gene

mRNA/cDNA for FAM188B2 Gene

(2) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM188B2 Gene

Family with sequence similarity 188, member B2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM188B2 Gene

No ASD Table

Relevant External Links for FAM188B2 Gene

GeneLoc Exon Structure for
FAM188B2
ECgene alternative splicing isoforms for
FAM188B2

Expression for FAM188B2 Gene

mRNA expression in normal human tissues for FAM188B2 Gene

mRNA differential expression in normal tissues according to GTEx for FAM188B2 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (17.2), Brain - Caudate (basal ganglia) (12.2), and Brain - Putamen (basal ganglia) (8.8).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for FAM188B2 Gene

SOURCE GeneReport for Unigene cluster for FAM188B2 Gene Hs.380222

genes like me logo Genes that share expressions with FAM188B2: view

Orthologs for FAM188B2 Gene

This gene was present in the common ancestor of animals.

Orthologs for FAM188B2 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia FAM188B2 37
  • 79 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FAM188B2 37
  • 83 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 17 (a)
ManyToMany
chicken
(Gallus gallus)
Aves FAM188B2 37
  • 64 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FAM188B2 37
  • 63 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii FAM188B2 37
  • 58 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG14142 37
  • 23 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 22 (a)
OneToOne
Species with no ortholog for FAM188B2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM188B2 Gene

ENSEMBL:
Gene Tree for FAM188B2 (if available)
TreeFam:
Gene Tree for FAM188B2 (if available)

Paralogs for FAM188B2 Gene

Paralogs for FAM188B2 Gene

genes like me logo Genes that share paralogs with FAM188B2: view

Variants for FAM188B2 Gene

Relevant External Links for FAM188B2 Gene

HapMap Linkage Disequilibrium report
FAM188B2

No data available for Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for FAM188B2 Gene

Disorders for FAM188B2 Gene

Relevant External Links for FAM188B2

Genetic Association Database (GAD)
FAM188B2
Human Genome Epidemiology (HuGE) Navigator
FAM188B2
genes like me logo Genes that share disorders with FAM188B2: view

No data available for UniProtKB/Swiss-Prot for FAM188B2 Gene

Publications for FAM188B2 Gene

  1. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 3 4
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 49
  3. Alternative splice variants of the USH3A gene Clarin 1 (CLRN1). (PMID: 20717163) Vastinsalo H. … Sankila E.M. (Eur. J. Hum. Genet. 2011) 3

Products for FAM188B2 Gene

Sources for FAM188B2 Gene

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