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Aliases for FAM186A Gene

Aliases for FAM186A Gene

  • Family With Sequence Similarity 186 Member A 2 3 5
  • Family With Sequence Similarity 186, Member A 2

External Ids for FAM186A Gene

Previous GeneCards Identifiers for FAM186A Gene

  • GC12M049009
  • GC12M050721
  • GC12M047754

Summaries for FAM186A Gene

GeneCards Summary for FAM186A Gene

FAM186A (Family With Sequence Similarity 186 Member A) is a Protein Coding gene. An important paralog of this gene is FAM186B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM186A Gene

Genomics for FAM186A Gene

Regulatory Elements for FAM186A Gene

Enhancers for FAM186A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F049661 1.7 FANTOM5 Ensembl ENCODE 10.7 +732.9 732909 5.0 HDGF PKNOX1 CREB3L1 ARID4B SIN3A ZNF2 ZNF302 ZNF143 ZNF416 ZNF207 DDX23 LOC390314 KANSL2 LIMA1 CCNT1 PRPF40B ENSG00000257298 FMNL3 LOC101927267 RPL35AP28
GH12F050612 1.6 FANTOM5 Ensembl ENCODE 9.4 -221.2 -221167 10.4 PKNOX1 ATF1 ZNF133 SIN3A GLI4 FEZF1 ZNF121 FOS ZNF263 YY2 LIMA1 ATF1 BCDIN3D ENSG00000257298 TFCP2 DIP2B FAM186A LARP4 GC12P050634
GH12F050921 1.4 FANTOM5 ENCODE 10.7 -528.9 -528858 7.0 PKNOX1 ARNT MLX CREB3L1 SIN3A ARID4B FEZF1 DMAP1 ZNF2 YY1 SLC11A2 LETMD1 TFCP2 ENSG00000257298 LIMA1 HNRNPA3P10 FAM186A RNU6-1273P CERS5 ATF1
GH12F051237 1.4 Ensembl ENCODE 10.7 -844.0 -844019 5.5 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 ZNF143 ZNF207 FOS SP3 TFCP2 FAM186A LETMD1 BIN2 CSRNP2 POU6F1 DAZAP2 LOC102723983
GH12F050530 1.3 Ensembl ENCODE 10.7 -136.4 -136449 4.6 HDGF MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 FOS RPL35AP28 CERS5 ENSG00000257253 RNU6-769P FAM186A DIP2B LOC283332 LIMA1 AQP6 GC12P050634
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM186A on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM186A Gene

Chromosome:
12
Start:
50,326,230 bp from pter
End:
50,396,635 bp from pter
Size:
70,406 bases
Orientation:
Minus strand

Genomic View for FAM186A Gene

Genes around FAM186A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM186A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM186A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM186A Gene

Proteins for FAM186A Gene

  • Protein details for FAM186A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NE01-F186A_HUMAN
    Recommended name:
    Protein FAM186A
    Protein Accession:
    A6NE01

    Protein attributes for FAM186A Gene

    Size:
    2351 amino acids
    Molecular mass:
    262758 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM186A Gene

Post-translational modifications for FAM186A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM186A Gene

No data available for DME Specific Peptides for FAM186A Gene

Domains & Families for FAM186A Gene

Protein Domains for FAM186A Gene

ProtoNet:

Suggested Antigen Peptide Sequences for FAM186A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A6NE01

UniProtKB/Swiss-Prot:

F186A_HUMAN :
  • Belongs to the FAM186 family.
Family:
  • Belongs to the FAM186 family.
genes like me logo Genes that share domains with FAM186A: view

No data available for Gene Families for FAM186A Gene

Function for FAM186A Gene

Phenotypes for FAM186A Gene

genes like me logo Genes that share phenotypes with FAM186A: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FAM186A Gene

Localization for FAM186A Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FAM186A gene
Compartment Confidence
nucleus 3
cytosol 2
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM186A Gene

Pathways & Interactions for FAM186A Gene

SuperPathways for FAM186A Gene

No Data Available

Interacting Proteins for FAM186A Gene

Gene Ontology (GO) - Biological Process for FAM186A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM186A Gene

Transcripts for FAM186A Gene

mRNA/cDNA for FAM186A Gene

(4) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(11) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM186A Gene

Family with sequence similarity 186, member A:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM186A Gene

No ASD Table

Relevant External Links for FAM186A Gene

GeneLoc Exon Structure for
FAM186A
ECgene alternative splicing isoforms for
FAM186A

Expression for FAM186A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM186A Gene

mRNA differential expression in normal tissues according to GTEx for FAM186A Gene

This gene is overexpressed in Testis (x39.5).

Protein differential expression in normal tissues from HIPED for FAM186A Gene

This gene is overexpressed in Bone marrow stromal cell (40.2) and Serum (23.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FAM186A Gene



NURSA nuclear receptor signaling pathways regulating expression of FAM186A Gene:

FAM186A

SOURCE GeneReport for Unigene cluster for FAM186A Gene:

Hs.133187
genes like me logo Genes that share expression patterns with FAM186A: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FAM186A Gene

Orthologs for FAM186A Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM186A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM186A 34 35
  • 95.74 (n)
dog
(Canis familiaris)
Mammalia FAM186A 34 35
  • 77.21 (n)
cow
(Bos Taurus)
Mammalia FAM186A 34 35
  • 76.22 (n)
oppossum
(Monodelphis domestica)
Mammalia FAM186A 35
  • 63 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fam186a 35
  • 53 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FAM186A 35
  • 14 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 19 (a)
OneToMany
Species where no ortholog for FAM186A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FAM186A Gene

ENSEMBL:
Gene Tree for FAM186A (if available)
TreeFam:
Gene Tree for FAM186A (if available)

Paralogs for FAM186A Gene

Paralogs for FAM186A Gene

(1) SIMAP similar genes for FAM186A Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with FAM186A: view

Variants for FAM186A Gene

Sequence variations from dbSNP and Humsavar for FAM186A Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs10083073 -- 50,387,933(+) CTGCC(C/T)ACGTG intron-variant
rs10083076 -- 50,388,330(+) ATCCT(C/T)TCAGC intron-variant
rs10128980 -- 50,367,708(+) acaca(A/C)acaca intron-variant
rs10219545 -- 50,336,821(+) TTCTC(A/T)TATTT intron-variant
rs10219600 -- 50,334,984(+) atgcc(A/C)ggtga intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM186A Gene

Variant ID Type Subtype PubMed ID
nsv983322 CNV duplication 23825009
esv3303098 CNV tandem duplication 20981092
esv2762979 CNV loss 21179565
esv2761738 CNV gain 21179565
esv1583460 CNV deletion 17803354
dgv275e214 CNV gain 21293372
dgv1499n100 CNV gain 25217958
dgv1498n100 CNV gain 25217958

Variation tolerance for FAM186A Gene

Gene Damage Index Score: 10.41; 90.90% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FAM186A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM186A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM186A Gene

Disorders for FAM186A Gene

Relevant External Links for FAM186A

Genetic Association Database (GAD)
FAM186A
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM186A

No disorders were found for FAM186A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM186A Gene

Publications for FAM186A Gene

  1. The finished DNA sequence of human chromosome 12. (PMID: 16541075) Scherer S.E. … Gibbs R.A. (Nature 2006) 3 4 64
  2. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 4 64
  3. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S. … Cupples L.A. (BMC Med. Genet. 2007) 46 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FAM186A Gene

Sources for FAM186A Gene

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