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Aliases for FAM183BP Gene

Aliases for FAM183BP Gene

  • Family With Sequence Similarity 183 Member B, Pseudogene 2 5
  • Family With Sequence Similarity 183, Member B 2 3
  • Testis Highly Expressed Protein 6 3 4
  • FAM183B 3 4
  • THEG6 3 4
  • Family With Sequence Similarity 183, Member B, Pseudogene 2
  • Acyloxyacyl Hydrolase (Neutrophil) 3
  • Protein FAM183B 3

External Ids for FAM183BP Gene

Previous HGNC Symbols for FAM183BP Gene

  • FAM183B

Summaries for FAM183BP Gene

GeneCards Summary for FAM183BP Gene

FAM183BP (Family With Sequence Similarity 183 Member B, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM183BP Gene

Genomics for FAM183BP Gene

Regulatory Elements for FAM183BP Gene

Enhancers for FAM183BP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around FAM183BP on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM183BP Gene

Chromosome:
7
Start:
38,685,346 bp from pter
End:
38,687,089 bp from pter
Size:
1,744 bases
Orientation:
Minus strand

Genomic View for FAM183BP Gene

Genes around FAM183BP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM183BP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM183BP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM183BP Gene

Proteins for FAM183BP Gene

  • Protein details for FAM183BP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZVS7-F183B_HUMAN
    Recommended name:
    Protein FAM183BP
    Protein Accession:
    Q6ZVS7
    Secondary Accessions:
    • A4D1Y1
    • C9W8M8

    Protein attributes for FAM183BP Gene

    Size:
    135 amino acids
    Molecular mass:
    16193 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC85784.1; Type=Miscellaneous discrepancy; Note=Wrong choice of frame.; Evidence={ECO:0000305};

neXtProt entry for FAM183BP Gene

Post-translational modifications for FAM183BP Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FAM183BP Gene

Domains & Families for FAM183BP Gene

Protein Domains for FAM183BP Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM183BP Gene

Graphical View of Domain Structure for InterPro Entry

Q6ZVS7

UniProtKB/Swiss-Prot:

F183B_HUMAN :
  • Belongs to the FAM183 family.
Family:
  • Belongs to the FAM183 family.
genes like me logo Genes that share domains with FAM183BP: view

No data available for Gene Families for FAM183BP Gene

Function for FAM183BP Gene

Phenotypes for FAM183BP Gene

GenomeRNAi human phenotypes for FAM183BP:
genes like me logo Genes that share phenotypes with FAM183BP: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM183BP Gene

Localization for FAM183BP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM183BP Gene

Pathways & Interactions for FAM183BP Gene

SuperPathways for FAM183BP Gene

No Data Available

Interacting Proteins for FAM183BP Gene

Gene Ontology (GO) - Biological Process for FAM183BP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM183BP Gene

Drugs & Compounds for FAM183BP Gene

No Compound Related Data Available

Transcripts for FAM183BP Gene

mRNA/cDNA for FAM183BP Gene

(1) REFSEQ mRNAs :
(9) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM183BP Gene

No ASD Table

Relevant External Links for FAM183BP Gene

GeneLoc Exon Structure for
FAM183BP
ECgene alternative splicing isoforms for
FAM183BP

Expression for FAM183BP Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM183BP Gene:

FAM183BP
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FAM183BP Gene

Orthologs for FAM183BP Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM183BP Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia FAM183A 35
  • 87 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 35
  • 72 (a)
ManyToMany
-- 35
  • 75 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 69 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Fam183b 35
  • 77 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 71 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia FAM183B 35
  • 99 (a)
OneToOne
chicken
(Gallus gallus)
Aves FAM183A 35
  • 53 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 49 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii FAM183B 35
  • 43 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 43 (a)
OneToMany
Species where no ortholog for FAM183BP was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM183BP Gene

ENSEMBL:
Gene Tree for FAM183BP (if available)
TreeFam:
Gene Tree for FAM183BP (if available)

Paralogs for FAM183BP Gene

No data available for Paralogs for FAM183BP Gene

Variants for FAM183BP Gene

Sequence variations from dbSNP and Humsavar for FAM183BP Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10229952 -- 38,684,960(+) TTAAC(A/G)TAATG downstream-variant-500B
rs10259635 -- 38,684,891(+) GGCAT(A/G)TTTAG downstream-variant-500B
rs11980087 -- 38,686,204(+) AGGCT(C/T)GCCAT nc-transcript-variant
rs56870388 -- 38,686,063(+) TCGCT(C/T)GGCTG nc-transcript-variant
rs59082935 -- 38,685,268(+) AAGTC(C/T)TCTCA downstream-variant-500B

Variation tolerance for FAM183BP Gene

Gene Damage Index Score: 0.15; 3.45% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FAM183BP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM183BP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for FAM183BP Gene

Disorders for FAM183BP Gene

Relevant External Links for FAM183BP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM183BP

No disorders were found for FAM183BP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM183BP Gene

Publications for FAM183BP Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 65
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4 65
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 65
  4. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 4 65
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 65

Products for FAM183BP Gene

Sources for FAM183BP Gene

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