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Aliases for FAM183B Gene

Aliases for FAM183B Gene

  • Family With Sequence Similarity 183, Member B 2
  • Acyloxyacyl Hydrolase (Neutrophil) 3

External Ids for FAM183B Gene

Summaries for FAM183B Gene

GeneCards Summary for FAM183B Gene

FAM183B (Family With Sequence Similarity 183, Member B) is a Pseudogene. An important paralog of this gene is FAM183A.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM183B Gene

Genomics for FAM183B Gene

Genomic Location for FAM183B Gene

Start:
38,685,346 bp from pter
End:
38,687,089 bp from pter
Size:
1,744 bases
Orientation:
Minus strand

Genomic View for FAM183B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM183B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM183B Gene

Regulatory Elements for FAM183B Gene

Proteins for FAM183B Gene

  • Protein details for FAM183B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZVS7-F183B_HUMAN
    Recommended name:
    Protein FAM183B
    Protein Accession:
    Q6ZVS7
    Secondary Accessions:
    • A4D1Y1

    Protein attributes for FAM183B Gene

    Size:
    135 amino acids
    Molecular mass:
    16193 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC85784.1; Type=Miscellaneous discrepancy; Note=Wrong choice of frame.; Evidence={ECO:0000305};

neXtProt entry for FAM183B Gene

Proteomics data for FAM183B Gene at MOPED

Post-translational modifications for FAM183B Gene

No Post-translational modifications

Other Protein References for FAM183B Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for FAM183B Gene

Domains for FAM183B Gene

Protein Domains for FAM183B Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

F183B_HUMAN
Family:
  • Belongs to the FAM183 family.:
    • Q6ZVS7
genes like me logo Genes that share domains with FAM183B: view

No data available for Gene Families for FAM183B Gene

Function for FAM183B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM183B Gene

Localization for FAM183B Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM183B Gene COMPARTMENTS Subcellular localization image for FAM183B gene
Compartment Confidence
nucleus 3
cytosol 2
extracellular 1

No data available for Gene Ontology (GO) - Cellular Components for FAM183B Gene

Pathways for FAM183B Gene

SuperPathways for FAM183B Gene

No Data Available

Interacting Proteins for FAM183B Gene

Gene Ontology (GO) - Biological Process for FAM183B Gene

None

No data available for Pathways by source for FAM183B Gene

Transcripts for FAM183B Gene

mRNA/cDNA for FAM183B Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(9) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM183B Gene

Acyloxyacyl hydrolase (neutrophil):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM183B Gene

No ASD Table

Relevant External Links for FAM183B Gene

GeneLoc Exon Structure for
FAM183B
ECgene alternative splicing isoforms for
FAM183B

Expression for FAM183B Gene

mRNA expression in normal human tissues for FAM183B Gene

mRNA differential expression in normal tissues according to GTEx for FAM183B Gene

This gene is overexpressed in Testis (42.8).

SOURCE GeneReport for Unigene cluster for FAM183B Gene Hs.144075

genes like me logo Genes that share expressions with FAM183B: view

Orthologs for FAM183B Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM183B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM183B 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FAM183A 37
  • 87 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 37
  • 72 (a)
ManyToMany
-- 37
  • 75 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Fam183b 37
  • 77 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 69 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 71 (a)
OneToMany
chicken
(Gallus gallus)
Aves FAM183A 37
  • 53 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 49 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii FAM183B 37
  • 43 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 43 (a)
OneToMany
Species with no ortholog for FAM183B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM183B Gene

ENSEMBL:
Gene Tree for FAM183B (if available)
TreeFam:
Gene Tree for FAM183B (if available)

Paralogs for FAM183B Gene

Paralogs for FAM183B Gene

Selected SIMAP similar genes for FAM183B Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM183B: view

Variants for FAM183B Gene

Sequence variations from dbSNP and Humsavar for FAM183B Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs6977659 -- 38,685,518(+) GACGG(A/G)GGGTT nc-transcript-variant
rs7783695 -- 38,687,490(+) AGAGA(C/T)GTTAT upstream-variant-2KB
rs10229952 -- 38,684,960(+) TTAAC(A/G)TAATG downstream-variant-500B
rs10259635 -- 38,684,891(+) GGCAT(A/G)TTTAG downstream-variant-500B
rs11980087 -- 38,686,204(+) AGGCT(C/T)GCCAT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM183B Gene

Variant ID Type Subtype PubMed ID
nsv887965 CNV Gain 21882294

Relevant External Links for FAM183B Gene

HapMap Linkage Disequilibrium report
FAM183B

Disorders for FAM183B Gene

No disorders were found for FAM183B Gene.

No data available for UniProtKB/Swiss-Prot for FAM183B Gene

Publications for FAM183B Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 4
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for FAM183B Gene

Sources for FAM183B Gene

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