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Aliases for FAM183A Gene

Aliases for FAM183A Gene

  • Family With Sequence Similarity 183, Member A 2 3
  • Protein FAM183A 3
  • HCG23177 3

External Ids for FAM183A Gene

Summaries for FAM183A Gene

GeneCards Summary for FAM183A Gene

FAM183A (Family With Sequence Similarity 183, Member A) is a Protein Coding gene. An important paralog of this gene is FAM183B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM183A Gene

Genomics for FAM183A Gene

Genomic Location for FAM183A Gene

Start:
43,145,132 bp from pter
End:
43,156,396 bp from pter
Size:
11,265 bases
Orientation:
Plus strand

Genomic View for FAM183A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM183A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM183A Gene

Regulatory Elements for FAM183A Gene

Proteins for FAM183A Gene

  • Protein details for FAM183A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NL82-F183A_HUMAN
    Recommended name:
    Protein FAM183A
    Protein Accession:
    A6NL82
    Secondary Accessions:
    • B7ZBL8

    Protein attributes for FAM183A Gene

    Size:
    134 amino acids
    Molecular mass:
    15996 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM183A Gene

Proteomics data for FAM183A Gene at MOPED

Post-translational modifications for FAM183A Gene

No Post-translational modifications

Other Protein References for FAM183A Gene

No data available for DME Specific Peptides for FAM183A Gene

Domains for FAM183A Gene

Protein Domains for FAM183A Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM183A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A6NL82

UniProtKB/Swiss-Prot:

F183A_HUMAN
Family:
  • Belongs to the FAM183 family.:
    • A6NL82
genes like me logo Genes that share domains with FAM183A: view

No data available for Gene Families for FAM183A Gene

Function for FAM183A Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM183A Gene

Localization for FAM183A Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM183A Gene COMPARTMENTS Subcellular localization image for FAM183A gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM183A Gene

Pathways for FAM183A Gene

SuperPathways for FAM183A Gene

No Data Available

Interacting Proteins for FAM183A Gene

Gene Ontology (GO) - Biological Process for FAM183A Gene

None

No data available for Pathways by source for FAM183A Gene

Transcripts for FAM183A Gene

mRNA/cDNA for FAM183A Gene

Unigene Clusters for FAM183A Gene

Family with sequence similarity 183, member A:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM183A Gene

No ASD Table

Relevant External Links for FAM183A Gene

GeneLoc Exon Structure for
FAM183A
ECgene alternative splicing isoforms for
FAM183A

Expression for FAM183A Gene

mRNA expression in normal human tissues for FAM183A Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for FAM183A Gene

This gene is overexpressed in Fallopian Tube (7.5), Pituitary (7.2), Brain - Hypothalamus (4.3), and Cervix - Endocervix (4.1).

SOURCE GeneReport for Unigene cluster for FAM183A Gene Hs.657614

genes like me logo Genes that share expressions with FAM183A: view

No data available for Protein expression and mRNA Expression by UniProt/SwissProt for FAM183A Gene

Orthologs for FAM183A Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM183A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM183A 35
  • 100 (n)
  • 100 (a)
FAM183A 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FAM183A 36
  • 87 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 72 (a)
ManyToMany
-- 36
  • 75 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Fam183b 36
  • 77 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 69 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 70 (a)
OneToMany
chicken
(Gallus gallus)
Aves FAM183A 36
  • 53 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 49 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii FAM183B 36
  • 44 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 45 (a)
OneToMany
Species with no ortholog for FAM183A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM183A Gene

ENSEMBL:
Gene Tree for FAM183A (if available)
TreeFam:
Gene Tree for FAM183A (if available)

Paralogs for FAM183A Gene

Paralogs for FAM183A Gene

Selected SIMAP similar genes for FAM183A Gene using alignment to 5 proteins:

Pseudogenes.org Pseudogenes for FAM183A Gene

genes like me logo Genes that share paralogs with FAM183A: view

Variants for FAM183A Gene

Sequence variations from dbSNP and Humsavar for FAM183A Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs475093 -- 43,150,666(+) AGTGA(C/G)TGCCA intron-variant
rs511875 -- 43,145,782(+) agaag(C/T)ggcaa intron-variant
rs519666 -- 43,148,115(+) AGGGC(G/T)AGAGC intron-variant
rs559834 -- 43,143,534(+) AGGAA(C/T)GGTCA upstream-variant-2KB
rs584672 -- 43,149,997(+) CTCAC(A/G)CTCAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM183A Gene

Variant ID Type Subtype PubMed ID
nsv829693 CNV Loss 17160897

Relevant External Links for FAM183A Gene

HapMap Linkage Disequilibrium report
FAM183A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM183A Gene

Disorders for FAM183A Gene

No disorders were found for FAM183A Gene.

No data available for UniProtKB/Swiss-Prot for FAM183A Gene

Publications for FAM183A Gene

  1. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 2 3
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4
  3. Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication. (PMID: 18854154) KAPnig R. … Chanda S.K. (Cell 2008) 3

Products for FAM183A Gene

Sources for FAM183A Gene

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