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Aliases for FAM182B Gene

Subcategory (RNA class) for FAM182B Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for FAM182B Gene

  • Family With Sequence Similarity 182, Member B 2 3

External Ids for FAM182B Gene

ORGUL Members for FAM182B Gene

Summaries for FAM182B Gene

GeneCards Summary for FAM182B Gene

FAM182B (Family With Sequence Similarity 182, Member B) is an RNA Gene, and belongs to the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM182B Gene

Genomics for FAM182B Gene

Genomic Location for FAM182B Gene

Start:
25,763,466 bp from pter
End:
25,868,225 bp from pter
Size:
104,760 bases
Orientation:
Minus strand

Genomic View for FAM182B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM182B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM182B Gene

No data available for Regulatory Elements for FAM182B Gene

Proteins for FAM182B Gene

  • Protein details for FAM182B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T319-F182B_HUMAN
    Recommended name:
    Protein FAM182B
    Protein Accession:
    Q5T319
    Secondary Accessions:
    • Q4G0Q1

    Protein attributes for FAM182B Gene

    Size:
    152 amino acids
    Molecular mass:
    15775 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for FAM182B Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FAM182B Gene

Proteomics data for FAM182B Gene at MOPED

Post-translational modifications for FAM182B Gene

No Post-translational modifications

Other Protein References for FAM182B Gene

No data available for DME Specific Peptides for FAM182B Gene

Domains for FAM182B Gene

Protein Domains for FAM182B Gene

ProtoNet:

Suggested Antigen Peptide Sequences for FAM182B Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FAM182B: view

No data available for Gene Families and UniProtKB/Swiss-Prot for FAM182B Gene

Function for FAM182B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM182B Gene

Localization for FAM182B Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM182B Gene COMPARTMENTS Subcellular localization image for FAM182B gene
Compartment Confidence
extracellular 2
nucleus 2
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM182B Gene

Pathways for FAM182B Gene

SuperPathways for FAM182B Gene

No Data Available

Interacting Proteins for FAM182B Gene

Gene Ontology (GO) - Biological Process for FAM182B Gene

None

No data available for Pathways by source for FAM182B Gene

Transcripts for FAM182B Gene

mRNA/cDNA for FAM182B Gene

(4) Additional mRNA sequences :
(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM182B Gene

Family with sequence similarity 182, member B:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM182B Gene

No ASD Table

Relevant External Links for FAM182B Gene

GeneLoc Exon Structure for
FAM182B
ECgene alternative splicing isoforms for
FAM182B

Expression for FAM182B Gene

mRNA expression in normal human tissues for FAM182B Gene

mRNA differential expression in normal tissues according to GTEx for FAM182B Gene

This gene is overexpressed in Testis (6.5).

SOURCE GeneReport for Unigene cluster for FAM182B Gene Hs.682103

genes like me logo Genes that share expressions with FAM182B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for FAM182B Gene

Orthologs for FAM182B Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for FAM182B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 84 (a)
OneToMany
-- 36
  • 86 (a)
OneToMany
Species with no ortholog for FAM182B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FAM182B Gene

ENSEMBL:
Gene Tree for FAM182B (if available)
TreeFam:
Gene Tree for FAM182B (if available)

Paralogs for FAM182B Gene

Selected SIMAP similar genes for FAM182B Gene using alignment to 3 proteins:

Pseudogenes.org Pseudogenes for FAM182B Gene

genes like me logo Genes that share paralogs with FAM182B: view

No data available for Paralogs for FAM182B Gene

Variants for FAM182B Gene

Sequence variations from dbSNP and Humsavar for FAM182B Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs1054675 -- 25,763,547(-) ACTTA(C/T)CATAT nc-transcript-variant
rs1054676 -- 25,763,530(-) GAACT(A/C)CCTTC nc-transcript-variant
rs1857321 -- 25,778,964(-) ATGCA(C/T)GGCAG intron-variant
rs1857322 -- 25,778,848(-) GTAAT(A/G)TTCAG intron-variant
rs1857328 -- 25,789,184(-) TGGTA(A/G)GATGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM182B Gene

Variant ID Type Subtype PubMed ID
nsv522873 CNV Gain 19592680
nsv912834 CNV Gain 21882294
dgv1319e1 CNV Complex 17122850
esv363 CNV CNV 17122850
nsv470545 CNV Gain 18288195
nsv820681 CNV Duplication 20802225
esv23664 CNV Gain+Loss 19812545
nsv7340 OTHER Inversion 18451855
esv990797 CNV Gain 20482838
nsv9794 CNV Loss 18304495
nsv510784 CNV Loss 20534489

Relevant External Links for FAM182B Gene

HapMap Linkage Disequilibrium report
FAM182B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM182B Gene

Disorders for FAM182B Gene

No disorders were found for FAM182B Gene.

No data available for UniProtKB/Swiss-Prot for FAM182B Gene

Publications for FAM182B Gene

  1. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 4
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for FAM182B Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate FAM182B
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FAM182B
    • Block miRNA regulation of FAM182B using miScript Target Protectors

    Sources for FAM182B Gene

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