FAM182A Gene
protein-coding GIFtS: 32
GCID: GC20P026035
|
|
family with sequence similarity 182, member A(Previous name: chromosome 20 open reading frame 91 )
(Previous symbol: C20orf91)
| |
Aliases
for FAM182A gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA
Quality score for the ORGUL clustered with this gene is 3
| Aliases |
|---|
| Family With Sequence Similarity 182, Member A1 2 | | C20orf911 2 3 | | BB329D4.11 | | C20orf91A1 | | Chromosome 20 Open Reading Frame 911 |
| External Ids: | HGNC: 162221 | Entrez Gene: 2848002 | Ensembl: ENSG000001258047 | UniProtKB: Q5T1J63 | | ORGUL members: | |
|---|
| NONCODE:n386276 | |
Export aliases for FAM182A gene to outside databasesPrevious GC identifers: GC20P025988 GC20P025926
|---|
Summaries
for FAM182A gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for FAM182A gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000020.10 NC_018931.1 NT_011387.8
Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for FAM182A
Other transcription factors
Search SABiosciences Chromatin IP Primers for FAM182A
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FAM182A |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 20p11.1 Ensembl cytogenetic band: 20p11.1 HGNC cytogenetic band: 20p11FAM182A Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 20 GeneLoc Exon Structure GeneLoc location for GC20P026035: view genomic region
(about GC identifiers)
Start:
|
26,035,250 bp from pter |
End:
|
26,073,683 bp from pter |
Size:
|
38,434 bases |
Orientation:
|
plus strand |
|
Proteins
for FAM182A gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: F182A_HUMAN, Q5T1J6 (See
protein sequence)Recommended Name: Protein FAM182A Size: 154 amino acids; 17173 Da
Secondary accessions: A2RRD0 Q8N947Explore the universe of human proteins at neXtProt for FAM182A: NX_Q5T1J6
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q5T1J6
FAM182A Protein expression data from MOPED and PaxDb: About this image 
ENSEMBL proteins: ENSP00000365580 ENSP00000373913 ENSP00000402417 ENSP00000246000 ENSP00000388057
Human Recombinant Protein Products:
FAM182A Antibody Products:
Assay Products for FAM182A: |
Protein
Domains /
Families
for FAM182A gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: Q5T1J6 |
Function
for FAM182A gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM182A |
|
Pathways & Interactions
for FAM182A gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for FAM182A
|
Drugs & Compounds
for FAM182A gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for FAM182A
Search CenterWatch for drugs/clinical trials and news about FAM182A / F182A 
|
Transcripts
for FAM182A gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for FAM182A gene: NM_182583.1 Unigene Cluster for FAM182A: Family with sequence similarity 182, member A Hs.516956 [show with all ESTs]Unigene Representative Sequence: NR_0267137 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000376398(uc010gdq.3) ENST00000389261 ENST00000439881 ENST00000471057
ENST00000482133 ENST00000246000 ENST00000415411
Primer
Products: |  | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for FAM182A
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat FAM182A | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat FAM182A | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat FAM182A |
Additional cDNA sequence: AK095693.1 AK097660.1 BC131537.1 NR_026713.1 6 DOTS entries: DT.100745006 DT.99930907 DT.120803187 DT.120803228 DT.75127200 DT.75199133 22 AceView cDNA sequences: CR607715 BX093846 AI161331 AA902670 BM702808 NM_182583 BU662160 AI243019 AI476717 AA953753 AK095693 AI990210 BM984943 AW135038 AI149914 H14536 BU662154 AL732297 AL731911 BX280969 H14535 BQ447386
GeneLoc Exon Structure
3 Alternative Splicing Database (ASD) splice patterns (SP) for FAM182A About this scheme
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4a | · | 4b | ^ | 5a | · | 5b | ^ | 6 | ^ | 7a | · | 7b |
|---|
|
| SP1: | | | | | | | - | | | | | | | | | | | | | | |
| SP2: | | | | | | | | | | | | | | | | | | | | | |
| SP3: | | | - | | - | | - | | - | | - | | - | | - | | | | | |
ECgene alternative splicing isoforms for FAM182A
|
Expression
for FAM182A gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| FAM182A expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GGGCCTGGGC
About this image
See FAM182A Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for FAM182A
SOURCE GeneReport for Unigene cluster: Hs.516956
SABiosciences Custom PCR Arrays for FAM182A
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for FAM182A
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat FAM182A | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat FAM182A | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat FAM182A | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM182A |
Orthologs
for FAM182A gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
--
ENSEMBL Gene Tree for FAM182A (if available)
TreeFam Gene Tree for FAM182A (if available) |
Paralogs
for FAM182A gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for FAM182A gene
- FAM182B2
1 SIMAP similar gene for FAM182A using alignment to 4 protein entries: F182A_HUMAN (see all proteins):FAM182B
FAM182A for paralogs About GeneDecksing
4 Pseudogenes.org Pseudogenes for FAM182A
PGOHUM00000259632 PGOHUM00000232768 PGOHUM00000233308 PGOHUM00000260604
|
Genomic Variants
for FAM182A gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 20 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for FAM182A (26035250 - 26073683 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 13 variations for FAM182A
12 CNVs: 73501 73499 4098 32419 90523 31036 73498 29708 73496 73500 73497 79163
1 Inversion: 37229 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing FAM182A |
|
Disorders
/ Diseases
for FAM182A gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Publications
for FAM182A gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for FAM182A gene integrated from 9 sources:
(articles sorted by number of sources associating them with FAM182A) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- The DNA sequence and comparative analysis of human chromosome 20. (PubMed id 11780052)1, 2 Deloukas P....Rogers J. (2001)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
|
External Searches for FAM182A gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing FAM182A gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing FAM182A gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing FAM182A gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for FAM182A | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for FAM182A gene:
Search GeneIP for patents involving FAM182A
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for FAM182A gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 |
| | | | |
 |
 |
|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat FAM182A | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing FAM182A | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FAM182A | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat FAM182A | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat FAM182A | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat FAM182A |
| |
 |  |  |  | |
| | | | Search Tocris compounds for FAM182A |
| |  |  |  |  | | | | |
 |
 |
 |
 | | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM182A |
|  |  |  | | | | Search ThermoFisher Antibodies for FAM182A |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat FAM182A |
|
|
|
|
GeneCards Homepage -
Last full update: 18 Mar 2013 -
Incrementals: 21 Mar 2013 , 15 Apr 2013 , 27 Apr 2013
View Random Gene
|
Category
|
|
|
von Willebrand factor
|
| GIFtS Group |
|
Developed at the Crown Human Genome Center,
Department of Molecular Genetics,
the Weizmann Institute of Science
Copyright © 1996-2013
, Weizmann Institute of Science. All Rights Reserved.
hostname: 356977-web1.xennexinc.com
index build: 100 solr: 1.4
|
