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Aliases for FAM182A Gene

Subcategory (RNA class) for FAM182A Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for FAM182A Gene

  • Family With Sequence Similarity 182 Member A 2 3 5
  • C20orf91 3 4
  • Family With Sequence Similarity 182, Member A 2
  • Chromosome 20 Open Reading Frame 91 2
  • BB329D4.1 3

External Ids for FAM182A Gene

Previous HGNC Symbols for FAM182A Gene

  • C20orf91

Previous GeneCards Identifiers for FAM182A Gene

  • GC20P025988
  • GC20P025926

Summaries for FAM182A Gene

GeneCards Summary for FAM182A Gene

FAM182A (Family With Sequence Similarity 182 Member A) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM182A Gene

Genomics for FAM182A Gene

Regulatory Elements for FAM182A Gene

Enhancers for FAM182A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F025245 1.7 FANTOM5 Ensembl ENCODE 8.7 -805.9 -805878 6.1 HDGF PKNOX1 CREB3L1 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 PYGB ABHD12 ENTPD6 ZNF337 FAM182A FAM182B ENSG00000274507
GH20F025584 1 ENCODE 9.2 -469.5 -469451 2.0 ARID4B SIN3A DMAP1 ZNF48 SLC30A9 ZNF121 GLIS2 ELK1 KLF7 SP3 PYGB ZNF337 NINL FAM182A FAM182B PIR54986
GH20F025232 1.8 FANTOM5 Ensembl ENCODE 4 -818.1 -818094 7.8 PKNOX1 ARNT ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF143 ZNF207 FOS ABHD12 PYGB ZNF337-AS1 ZNF337 ENTPD6 NANP FAM182B FAM182A LOC100134868 NINL
GH20F025225 1.2 Ensembl ENCODE 3.9 -827.9 -827932 2.6 ELF3 HDAC1 MLX ARID4B FEZF1 DMAP1 DNMT3B ZNF366 ZNF207 EGR2 ABHD12 PYGB ENTPD6 FAM182A NINL ENSG00000279322 ENSG00000202414
GH20F025984 0.5 Ensembl 4.9 -69.4 -69414 0.8 ZBTB2 NRF1 MLLT1 FAM182B ZNF337 FAM182A PIR33096 LINC01733
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM182A on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM182A Gene

Chromosome:
20
Start:
26,054,614 bp from pter
End:
26,086,917 bp from pter
Size:
32,304 bases
Orientation:
Plus strand

Genomic View for FAM182A Gene

Genes around FAM182A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM182A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM182A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM182A Gene

Proteins for FAM182A Gene

  • Protein details for FAM182A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T1J6-F182A_HUMAN
    Recommended name:
    Protein FAM182A
    Protein Accession:
    Q5T1J6
    Secondary Accessions:
    • A2RRD0
    • Q8N947

    Protein attributes for FAM182A Gene

    Size:
    154 amino acids
    Molecular mass:
    17173 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM182A Gene

Post-translational modifications for FAM182A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FAM182A Gene

Domains & Families for FAM182A Gene

Protein Domains for FAM182A Gene

ProtoNet:

Suggested Antigen Peptide Sequences for FAM182A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FAM182A: view

No data available for Gene Families and UniProtKB/Swiss-Prot for FAM182A Gene

Function for FAM182A Gene

Phenotypes for FAM182A Gene

genes like me logo Genes that share phenotypes with FAM182A: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM182A Gene

Localization for FAM182A Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FAM182A gene
Compartment Confidence
extracellular 2
mitochondrion 1
peroxisome 1
nucleus 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM182A Gene

Pathways & Interactions for FAM182A Gene

SuperPathways for FAM182A Gene

No Data Available

Interacting Proteins for FAM182A Gene

Gene Ontology (GO) - Biological Process for FAM182A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM182A Gene

Transcripts for FAM182A Gene

Unigene Clusters for FAM182A Gene

Family with sequence similarity 182, member A:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM182A Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7a · 7b
SP1: -
SP2:
SP3: - - - - - - -

Relevant External Links for FAM182A Gene

GeneLoc Exon Structure for
FAM182A
ECgene alternative splicing isoforms for
FAM182A

Expression for FAM182A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM182A Gene

mRNA differential expression in normal tissues according to GTEx for FAM182A Gene

This gene is overexpressed in Testis (x5.0).

NURSA nuclear receptor signaling pathways regulating expression of FAM182A Gene:

FAM182A

SOURCE GeneReport for Unigene cluster for FAM182A Gene:

Hs.516956
genes like me logo Genes that share expression patterns with FAM182A: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FAM182A Gene

Orthologs for FAM182A Gene

Evolution for FAM182A Gene

ENSEMBL:
Gene Tree for FAM182A (if available)
TreeFam:
Gene Tree for FAM182A (if available)

No data available for Orthologs for FAM182A Gene

Paralogs for FAM182A Gene

(1) SIMAP similar genes for FAM182A Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with FAM182A: view

No data available for Paralogs for FAM182A Gene

Variants for FAM182A Gene

Sequence variations from dbSNP and Humsavar for FAM182A Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs11087535 -- 26,079,358(+) CTTGA(A/G)GTTTA intron-variant
rs111143870 -- 26,074,284(+) TCACC(A/T)TGTTC intron-variant
rs111381916 -- 26,074,140(+) TCATC(A/G)TCACT intron-variant
rs111387627 -- 26,052,752(+) CTGCA(C/G)AGCCC upstream-variant-2KB
rs111400661 -- 26,057,472(+) TCCAC(G/T)GGGTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM182A Gene

Variant ID Type Subtype PubMed ID
dgv2417e59 CNV duplication 20981092
dgv2418e59 CNV duplication 20981092
dgv2419e59 CNV duplication 20981092
dgv4292n100 CNV gain 25217958
esv25843 CNV gain+loss 19812545
esv2665127 CNV deletion 23128226
esv2758790 CNV gain+loss 17122850
esv2763226 CNV gain 21179565
esv3358537 CNV duplication 20981092
esv3360346 CNV duplication 20981092
esv3376686 CNV duplication 20981092
esv3893328 CNV gain 25118596
nsv1057983 CNV loss 25217958
nsv1077906 CNV duplication 25765185
nsv1128829 CNV duplication 24896259
nsv1141382 CNV duplication 24896259
nsv1141383 CNV duplication 24896259
nsv1146734 CNV duplication 26484159
nsv1149911 CNV duplication 26484159
nsv1153810 OTHER inversion 26484159
nsv470545 CNV gain 18288195
nsv522873 CNV gain 19592680
nsv585761 CNV gain 21841781
nsv585769 CNV loss 21841781
nsv585770 CNV gain 21841781
nsv7340 OTHER inversion 18451855
nsv821510 CNV duplication 20802225
nsv953013 CNV duplication 24416366
nsv956227 CNV deletion 24416366
nsv962569 CNV duplication 23825009
nsv9797 CNV loss 18304495
nsv9798 CNV gain 18304495

Relevant External Links for FAM182A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM182A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM182A Gene

Disorders for FAM182A Gene

Relevant External Links for FAM182A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM182A

No disorders were found for FAM182A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM182A Gene

Publications for FAM182A Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FAM182A Gene

Sources for FAM182A Gene

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