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Aliases for FAM180B Gene

Aliases for FAM180B Gene

  • Family With Sequence Similarity 180, Member B 2 3
  • Hypothetical Gene Supported By BC065704 2

External Ids for FAM180B Gene

Previous GeneCards Identifiers for FAM180B Gene

  • GC11P047566
  • GC11P047309

Summaries for FAM180B Gene

GeneCards Summary for FAM180B Gene

FAM180B (Family With Sequence Similarity 180, Member B) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM180B Gene

Genomics for FAM180B Gene

Regulatory Elements for FAM180B Gene

Genomic Location for FAM180B Gene

Start:
47,586,678 bp from pter
End:
47,589,194 bp from pter
Size:
2,517 bases
Orientation:
Plus strand

Genomic View for FAM180B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM180B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM180B Gene

Proteins for FAM180B Gene

  • Protein details for FAM180B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6P0A1-F180B_HUMAN
    Recommended name:
    Protein FAM180B
    Protein Accession:
    Q6P0A1
    Secondary Accessions:

    Protein attributes for FAM180B Gene

    Size:
    224 amino acids
    Molecular mass:
    25167 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM180B Gene

Proteomics data for FAM180B Gene at MOPED

Post-translational modifications for FAM180B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM180B Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FAM180B Gene

Domains for FAM180B Gene

Protein Domains for FAM180B Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM180B Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6P0A1

UniProtKB/Swiss-Prot:

F180B_HUMAN :
  • Q6P0A1
Family:
  • Belongs to the FAM180 family.
genes like me logo Genes that share domains with FAM180B: view

No data available for Gene Families for FAM180B Gene

Function for FAM180B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM180B Gene

Localization for FAM180B Gene

Subcellular locations from UniProtKB/Swiss-Prot for FAM180B Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM180B Gene COMPARTMENTS Subcellular localization image for FAM180B gene
Compartment Confidence
plasma membrane 2
cytosol 1
endoplasmic reticulum 1
extracellular 1
lysosome 1
mitochondrion 1
nucleus 1

Gene Ontology (GO) - Cellular Components for FAM180B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with FAM180B: view

Pathways for FAM180B Gene

SuperPathways for FAM180B Gene

No Data Available

Interacting Proteins for FAM180B Gene

Gene Ontology (GO) - Biological Process for FAM180B Gene

None

No data available for Pathways by source for FAM180B Gene

Transcripts for FAM180B Gene

mRNA/cDNA for FAM180B Gene

(1) REFSEQ mRNAs :
(3) Selected AceView cDNA sequences:
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM180B Gene

Family with sequence similarity 180, member B:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM180B Gene

No ASD Table

Relevant External Links for FAM180B Gene

GeneLoc Exon Structure for
FAM180B
ECgene alternative splicing isoforms for
FAM180B

Expression for FAM180B Gene

mRNA expression in normal human tissues for FAM180B Gene

mRNA differential expression in normal tissues according to GTEx for FAM180B Gene

This gene is overexpressed in Nerve - Tibial (8.0), Skin - Sun Exposed (Lower leg) (6.8), Skin - Not Sun Exposed (Suprapubic) (5.6), and Adipose - Subcutaneous (5.1).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for FAM180B Gene

SOURCE GeneReport for Unigene cluster for FAM180B Gene Hs.502529

genes like me logo Genes that share expressions with FAM180B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for FAM180B Gene

Orthologs for FAM180B Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM180B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM180B 35
  • 99.27 (n)
  • 97.81 (a)
FAM180B 36
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FAM180B 35
  • 89.25 (n)
  • 85.25 (a)
dog
(Canis familiaris)
Mammalia FAM180B 35
  • 89.98 (n)
  • 86.34 (a)
FAM180B 36
  • 74 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia FAM180B 36
  • 57 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FAM180B 36
  • 59 (a)
OneToOne
chicken
(Gallus gallus)
Aves FAM180B 36
  • 28 (a)
OneToOne
Species with no ortholog for FAM180B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FAM180B Gene

ENSEMBL:
Gene Tree for FAM180B (if available)
TreeFam:
Gene Tree for FAM180B (if available)

Paralogs for FAM180B Gene

No data available for Paralogs for FAM180B Gene

Variants for FAM180B Gene

Sequence variations from dbSNP and Humsavar for FAM180B Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs1040199 -- 47,588,528(-) AGATG(C/T)CAGAC utr-variant-3-prime
rs3029432 -- 47,588,756(+) TGTGT(-/G/T/TG)TGGAG utr-variant-3-prime
rs4486587 - 47,588,315(+) GCTGG(A/G)CCCAG missense, reference
rs5020951 -- 47,588,721(+) GTGAG(A/T)GTGTG utr-variant-3-prime
rs7129821 -- 47,585,596(+) AGCAA(C/T)TCTGC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FAM180B Gene

Variant ID Type Subtype PubMed ID
nsv832142 CNV Loss 17160897
nsv825872 CNV Gain 20364138
nsv509405 CNV Insertion 20534489
nsv825873 CNV Gain 20364138

Relevant External Links for FAM180B Gene

HapMap Linkage Disequilibrium report
FAM180B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM180B Gene

Disorders for FAM180B Gene

No disorders were found for FAM180B Gene.

No data available for UniProtKB/Swiss-Prot for FAM180B Gene

Publications for FAM180B Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for FAM180B Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate FAM180B
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat
  • Predesigned siRNA for gene silencing in human,mouse,rat for FAM180B
  • Block miRNA regulation of FAM180B using miScript Target Protectors

Sources for FAM180B Gene

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