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Aliases for FAM177A1 Gene

Aliases for FAM177A1 Gene

  • Family With Sequence Similarity 177, Member A1 2 3
  • C14orf24 3 4
  • Chromosome 14 Open Reading Frame 24 2
  • Protein FAM177A1 3

External Ids for FAM177A1 Gene

Previous Symbols for FAM177A1 Gene

  • C14orf24

Summaries for FAM177A1 Gene

GeneCards Summary for FAM177A1 Gene

FAM177A1 (Family With Sequence Similarity 177, Member A1) is a Protein Coding gene. An important paralog of this gene is FAM177B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM177A1 Gene

Genomics for FAM177A1 Gene

Genomic Location for FAM177A1 Gene

Start:
35,044,907 bp from pter
End:
35,113,130 bp from pter
Size:
68,224 bases
Orientation:
Plus strand

Genomic View for FAM177A1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM177A1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM177A1 Gene

Regulatory Elements for FAM177A1 Gene

Proteins for FAM177A1 Gene

  • Protein details for FAM177A1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N128-F177A_HUMAN
    Recommended name:
    Protein FAM177A1
    Protein Accession:
    Q8N128
    Secondary Accessions:
    • Q68CT2

    Protein attributes for FAM177A1 Gene

    Size:
    213 amino acids
    Molecular mass:
    23757 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for FAM177A1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FAM177A1 Gene

Proteomics data for FAM177A1 Gene at MOPED

Post-translational modifications for FAM177A1 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys131

No data available for DME Specific Peptides for FAM177A1 Gene

Domains for FAM177A1 Gene

Protein Domains for FAM177A1 Gene

Blocks:
InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM177A1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8N128

UniProtKB/Swiss-Prot:

F177A_HUMAN
Family:
  • Belongs to the FAM177 family.:
    • Q8N128
genes like me logo Genes that share domains with FAM177A1: view

No data available for Gene Families for FAM177A1 Gene

Function for FAM177A1 Gene

Phenotypes for FAM177A1 Gene

GenomeRNAi human phenotypes for FAM177A1:
genes like me logo Genes that share phenotypes with FAM177A1: view

miRNA for FAM177A1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for FAM177A1 Gene

Localization for FAM177A1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM177A1 Gene COMPARTMENTS Subcellular localization image for FAM177A1 gene
Compartment Confidence
extracellular 2
cytosol 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM177A1 Gene

Pathways for FAM177A1 Gene

SuperPathways for FAM177A1 Gene

No Data Available

Interacting Proteins for FAM177A1 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000280987%0d%0a9606.ENSP00000344818%0d%0a9606.ENSP00000349658%0d%0a
Selected Interacting proteins: ENSP00000280987 for FAM177A1 Gene via STRING

Gene Ontology (GO) - Biological Process for FAM177A1 Gene

None

No data available for Pathways by source for FAM177A1 Gene

Transcripts for FAM177A1 Gene

Unigene Clusters for FAM177A1 Gene

Family with sequence similarity 177, member A1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM177A1 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b
SP1: - - - -
SP2: - - - - - -
SP3: -
SP4: - -
SP5: -

Relevant External Links for FAM177A1 Gene

GeneLoc Exon Structure for
FAM177A1
ECgene alternative splicing isoforms for
FAM177A1

Expression for FAM177A1 Gene

mRNA expression in normal human tissues for FAM177A1 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for FAM177A1 Gene

SOURCE GeneReport for Unigene cluster for FAM177A1 Gene Hs.446357

genes like me logo Genes that share expressions with FAM177A1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for FAM177A1 Gene

Orthologs for FAM177A1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM177A1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM177A1 35
  • 99.29 (n)
  • 98.73 (a)
FAM177A1 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FAM177A1 35
  • 88.31 (n)
  • 89.57 (a)
FAM177A1 36
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FAM177A1 35
  • 90.17 (n)
  • 88.46 (a)
FAM177A1 36
  • 90 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 1700047I17Rik2 16
1700047I17Rik2 36
  • 85 (a)
OneToMany
Fam177a 36
  • 85 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia FAM177A1 36
  • 53 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FAM177A1 36
  • 77 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fam177a1 35
  • 87 (n)
  • 90.66 (a)
chicken
(Gallus gallus)
Aves FAM177A1 35
  • 74.64 (n)
  • 76.56 (a)
FAM177A1 36
  • 73 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FAM177A1 36
  • 66 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.24665 35
tropical clawed frog
(Silurana tropicalis)
Amphibia fam177a1 35
  • 70.1 (n)
  • 69.14 (a)
Str.3217 35
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.12525 35
zebrafish
(Danio rerio)
Actinopterygii fam177a1 35
  • 64.56 (n)
  • 62.64 (a)
fam177a1 36
  • 52 (a)
OneToMany
FAM177A1 (1 of 2) 36
  • 46 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4574 36
  • 38 (a)
OneToMany
Species with no ortholog for FAM177A1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM177A1 Gene

ENSEMBL:
Gene Tree for FAM177A1 (if available)
TreeFam:
Gene Tree for FAM177A1 (if available)

Paralogs for FAM177A1 Gene

Paralogs for FAM177A1 Gene

Selected SIMAP similar genes for FAM177A1 Gene using alignment to 6 proteins:

Pseudogenes.org Pseudogenes for FAM177A1 Gene

genes like me logo Genes that share paralogs with FAM177A1: view

Variants for FAM177A1 Gene

Sequence variations from dbSNP and Humsavar for FAM177A1 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs799471 -- 35,061,422(-) TCAGC(C/T)CCTAA intron-variant
rs799472 -- 35,061,262(-) atctc(C/T)tccca intron-variant
rs799473 -- 35,047,007(-) ATGCC(A/C)AGGCA intron-variant, utr-variant-5-prime
rs799474 -- 35,046,893(-) TGGTA(C/G)ACCAG intron-variant, utr-variant-5-prime
rs799475 -- 35,045,744(-) TGTGC(A/G)TATGT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FAM177A1 Gene

Variant ID Type Subtype PubMed ID
nsv483012 CNV Complex 15286789
nsv901602 CNV Loss 21882294
nsv901607 CNV Loss 21882294
dgv1871n71 CNV Loss 21882294
nsv901611 CNV Gain 21882294
nsv901612 CNV Gain+Loss 21882294
nsv1239 CNV Loss 18451855
nsv901614 CNV Loss 21882294
nsv901615 CNV Loss 21882294
esv2515788 CNV Deletion 19546169

Relevant External Links for FAM177A1 Gene

HapMap Linkage Disequilibrium report
FAM177A1
Human Gene Mutation Database (HGMD)
FAM177A1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM177A1 Gene

Disorders for FAM177A1 Gene

Relevant External Links for FAM177A1

Genetic Association Database (GAD)
FAM177A1
Human Genome Epidemiology (HuGE) Navigator
FAM177A1
genes like me logo Genes that share disorders with FAM177A1: view

No data available for UniProtKB/Swiss-Prot for FAM177A1 Gene

Publications for FAM177A1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Noninvasive imaging of microRNA124a-mediated repression of the chromosome 14 ORF 24 gene during neurogenesis. (PMID: 19663910) Ko H.Y. … Kim S. (FEBS J. 2009) 3
  4. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PMID: 21139048) Danielsen J.M. … Nielsen M.L. (Mol. Cell Proteomics 2011) 3
  5. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PMID: 21890473) Wagner S.A. … Choudhary C. (Mol. Cell Proteomics 2011) 3

Products for FAM177A1 Gene

Sources for FAM177A1 Gene

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