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Aliases for FAM172BP Gene

Aliases for FAM172BP Gene

  • Family With Sequence Similarity 172 Member B, Pseudogene 2 3 5
  • FAM172B 3 4
  • Family With Sequence Similarity 172, Member B, Pseudogene 2
  • Family With Sequence Similarity 172, Member B Pseudogene 2
  • Similar To CG10038-PB, Isoform B 2
  • FAM172B Pseudogene 4

External Ids for FAM172BP Gene

Previous HGNC Symbols for FAM172BP Gene

  • FAM172B

Previous GeneCards Identifiers for FAM172BP Gene

  • GC03P101238

Summaries for FAM172BP Gene

GeneCards Summary for FAM172BP Gene

FAM172BP (Family With Sequence Similarity 172 Member B, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM172BP Gene

Genomics for FAM172BP Gene

Regulatory Elements for FAM172BP Gene

Enhancers for FAM172BP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F101517 1.1 Ensembl ENCODE 0.8 -0.1 -146 1.4 PKNOX1 CBX3 TBL1XR1 YY1 EGR1 CBX5 ETV6 FOS CREM JUNB SENP7 TRMT10C ZBTB11-AS1 FAM172BP
GH03F101519 1 Ensembl ENCODE 0.8 +2.2 2215 2.6 SOX13 SAP130 JUN ZNF384 CEBPG RARA NR2F6 FOS HOMEZ MIXL1 TRMT10C SENP7 FAM172BP
GH03F101529 1.2 Ensembl ENCODE 0.4 +12.6 12586 4.3 ATF1 ARNT ELK1 GATA2 NCOA1 REST MBD2 MEF2D SMARCA4 MYNN SENP7 TRMT10C IMPG2 PDCL3P4 FAM172BP
GH03F101543 0.6 Ensembl 0.3 +24.7 24734 0.4 HLF CEBPA JUNB TCF7 ATF2 SENP7 TRMT10C FAM172BP
GH03F101559 0.4 Ensembl 0.2 +41.0 41034 0.6 ZBTB33 SENP7 TRMT10C FAM172BP
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM172BP on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM172BP Gene

Chromosome:
3
Start:
101,518,867 bp from pter
End:
101,523,887 bp from pter
Size:
5,021 bases
Orientation:
Plus strand

Genomic View for FAM172BP Gene

Genes around FAM172BP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM172BP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM172BP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM172BP Gene

Proteins for FAM172BP Gene

  • Protein details for FAM172BP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NC97-F172B_HUMAN
    Recommended name:
    Putative protein FAM172B
    Protein Accession:
    A6NC97

    Protein attributes for FAM172BP Gene

    Size:
    362 amino acids
    Molecular mass:
    41969 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM172BP Gene

Post-translational modifications for FAM172BP Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FAM172BP Gene

Domains & Families for FAM172BP Gene

Protein Domains for FAM172BP Gene

ProtoNet:

Suggested Antigen Peptide Sequences for FAM172BP Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A6NC97

UniProtKB/Swiss-Prot:

F172B_HUMAN :
  • Belongs to the UPF0528 family.
Family:
  • Belongs to the UPF0528 family.
genes like me logo Genes that share domains with FAM172BP: view

No data available for Gene Families for FAM172BP Gene

Function for FAM172BP Gene

Phenotypes for FAM172BP Gene

GenomeRNAi human phenotypes for FAM172BP:
genes like me logo Genes that share phenotypes with FAM172BP: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM172BP Gene

Localization for FAM172BP Gene

Subcellular locations from UniProtKB/Swiss-Prot for FAM172BP Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for FAM172BP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with FAM172BP: view

No data available for Subcellular locations from COMPARTMENTS for FAM172BP Gene

Pathways & Interactions for FAM172BP Gene

SuperPathways for FAM172BP Gene

No Data Available

Interacting Proteins for FAM172BP Gene

Gene Ontology (GO) - Biological Process for FAM172BP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM172BP Gene

Transcripts for FAM172BP Gene

mRNA/cDNA for FAM172BP Gene

(2) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM172BP Gene

Family with sequence similarity 172, member B pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM172BP Gene

No ASD Table

Relevant External Links for FAM172BP Gene

GeneLoc Exon Structure for
FAM172BP
ECgene alternative splicing isoforms for
FAM172BP

Expression for FAM172BP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM172BP Gene

mRNA differential expression in normal tissues according to GTEx for FAM172BP Gene

This gene is overexpressed in Testis (x8.1).

NURSA nuclear receptor signaling pathways regulating expression of FAM172BP Gene:

FAM172BP

SOURCE GeneReport for Unigene cluster for FAM172BP Gene:

Hs.518125
genes like me logo Genes that share expression patterns with FAM172BP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FAM172BP Gene

Orthologs for FAM172BP Gene

Evolution for FAM172BP Gene

ENSEMBL:
Gene Tree for FAM172BP (if available)
TreeFam:
Gene Tree for FAM172BP (if available)

No data available for Orthologs for FAM172BP Gene

Paralogs for FAM172BP Gene

(1) SIMAP similar genes for FAM172BP Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM172BP: view

No data available for Paralogs for FAM172BP Gene

Variants for FAM172BP Gene

Sequence variations from dbSNP and Humsavar for FAM172BP Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10552692 -- 101,517,028(+) TTTTT(-/TT)CCCGG upstream-variant-2KB
rs111775772 -- 101,520,683(+) CATCT(-/A)CAAAA intron-variant
rs114577131 -- 101,520,884(+) TTTGA(A/G)AGTCA intron-variant
rs116570798 -- 101,517,734(+) GAGGG(C/T)TAAGG upstream-variant-2KB
rs116931811 -- 101,518,679(+) TTGTC(A/G)GCCAT upstream-variant-2KB

Relevant External Links for FAM172BP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM172BP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FAM172BP Gene

Disorders for FAM172BP Gene

Relevant External Links for FAM172BP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM172BP

No disorders were found for FAM172BP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM172BP Gene

Publications for FAM172BP Gene

  1. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 4 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4 64

Products for FAM172BP Gene

Sources for FAM172BP Gene

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