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Aliases for FAM172BP Gene

Aliases for FAM172BP Gene

  • Family With Sequence Similarity 172, Member B, Pseudogene 2
  • Family With Sequence Similarity 172, Member B Pseudogene 2 3
  • FAM172B 3 4
  • Similar To CG10038-PB 2
  • FAM172B Pseudogene 4
  • Isoform B 2

External Ids for FAM172BP Gene

Previous Symbols for FAM172BP Gene

  • FAM172B

Summaries for FAM172BP Gene

GeneCards Summary for FAM172BP Gene

FAM172BP (Family With Sequence Similarity 172, Member B, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM172BP Gene

Genomics for FAM172BP Gene

Genomic Location for FAM172BP Gene

Start:
101,518,867 bp from pter
End:
101,523,887 bp from pter
Size:
5,021 bases
Orientation:
Plus strand

Genomic View for FAM172BP Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM172BP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM172BP Gene

No data available for Regulatory Elements for FAM172BP Gene

Proteins for FAM172BP Gene

  • Protein details for FAM172BP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NC97-F172B_HUMAN
    Recommended name:
    Putative protein FAM172B
    Protein Accession:
    A6NC97
    Secondary Accessions:

    Protein attributes for FAM172BP Gene

    Size:
    362 amino acids
    Molecular mass:
    41969 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM172BP Gene

Proteomics data for FAM172BP Gene at MOPED

Post-translational modifications for FAM172BP Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FAM172BP Gene

Domains for FAM172BP Gene

Protein Domains for FAM172BP Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

F172B_HUMAN
Family:
  • Belongs to the UPF0528 family.:
    • A6NC97
genes like me logo Genes that share domains with FAM172BP: view

No data available for Gene Families for FAM172BP Gene

Function for FAM172BP Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM172BP Gene

Localization for FAM172BP Gene

Subcellular locations from UniProtKB/Swiss-Prot for FAM172BP Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for FAM172BP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with FAM172BP: view

Pathways for FAM172BP Gene

SuperPathways for FAM172BP Gene

No Data Available

Interacting Proteins for FAM172BP Gene

Gene Ontology (GO) - Biological Process for FAM172BP Gene

None

No data available for Pathways by source for FAM172BP Gene

Transcripts for FAM172BP Gene

mRNA/cDNA for FAM172BP Gene

(2) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM172BP Gene

Family with sequence similarity 172, member B pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM172BP Gene

No ASD Table

Relevant External Links for FAM172BP Gene

GeneLoc Exon Structure for
FAM172BP
ECgene alternative splicing isoforms for
FAM172BP

Expression for FAM172BP Gene

mRNA expression in normal human tissues for FAM172BP Gene

mRNA differential expression in normal tissues according to GTEx for FAM172BP Gene

This gene is overexpressed in Testis (8.1).

SOURCE GeneReport for Unigene cluster for FAM172BP Gene Hs.518125

genes like me logo Genes that share expressions with FAM172BP: view

Orthologs for FAM172BP Gene

Evolution for FAM172BP Gene

ENSEMBL:
Gene Tree for FAM172BP (if available)
TreeFam:
Gene Tree for FAM172BP (if available)

No data available for Orthologs for FAM172BP Gene

Paralogs for FAM172BP Gene

Selected SIMAP similar genes for FAM172BP Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM172BP: view

No data available for Paralogs for FAM172BP Gene

Variants for FAM172BP Gene

Sequence variations from dbSNP and Humsavar for FAM172BP Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs2317706 -- 101,517,875(+) ATCTT(G/T)ATTTG upstream-variant-2KB
rs4683849 -- 101,518,463(+) ggtgc(A/G)actat upstream-variant-2KB
rs6798263 -- 101,518,666(+) gccat(A/G)tgaga upstream-variant-2KB
rs7623537 -- 101,519,046(+) gggag(C/T)gggga nc-transcript-variant
rs7631399 -- 101,523,626(+) TCATC(A/G)TTAAT nc-transcript-variant

Relevant External Links for FAM172BP Gene

HapMap Linkage Disequilibrium report
FAM172BP

No data available for Structural Variations from Database of Genomic Variants (DGV) for FAM172BP Gene

Disorders for FAM172BP Gene

No disorders were found for FAM172BP Gene.

No data available for UniProtKB/Swiss-Prot for FAM172BP Gene

Publications for FAM172BP Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  2. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 4

Products for FAM172BP Gene

Sources for FAM172BP Gene

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