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Aliases for FAM170B-AS1 Gene

Subcategory (RNA class) for FAM170B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM170B-AS1 Gene

  • FAM170B Antisense RNA 1 2 3 5

External Ids for FAM170B-AS1 Gene

Previous GeneCards Identifiers for FAM170B-AS1 Gene

  • GC10P050331

Summaries for FAM170B-AS1 Gene

GeneCards Summary for FAM170B-AS1 Gene

FAM170B-AS1 (FAM170B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM170B-AS1 Gene

Genomics for FAM170B-AS1 Gene

Regulatory Elements for FAM170B-AS1 Gene

Enhancers for FAM170B-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F049078 0.8 Ensembl ENCODE 11.5 -41.2 -41247 3.3 HLF MAX MAFG ZIC2 RAD21 TEAD3 YY1 ARID1B ZNF316 SMARCA4 FAM170B VSTM4 FAM170B-AS1 PIR51510 PIR36323
GH10F049169 1.2 FANTOM5 Ensembl 11.5 +47.5 47462 0.6 FAM170B FAM170B-AS1 C10orf128
GH10F049082 0.8 Ensembl ENCODE 11.4 -38.3 -38283 2.2 CTCF ATF1 PKNOX1 ARNT JUNB TRIM22 REST RAD21 NR2F2 RAD51 FAM170B VSTM4 FAM170B-AS1 LRRC18 PIR51510 PIR36323
GH10F049008 1 Ensembl ENCODE 11.4 -112.0 -112007 3.4 ATF1 ARID4B YY1 ZNF766 GATA2 SP5 MIER2 PPARG KAT8 NFIL3 VSTM4 FAM170B ENSG00000226576 FAM170B-AS1 WDFY4 DRGX LRRC18 ENSG00000241577 GC10M049015 LOC105378298
GH10F049023 1 Ensembl ENCODE 11.3 -97.2 -97216 2.4 SOX13 TFAP4 MTA2 NR2F1 JUNB MLLT1 NR2F6 TBX21 ZNF644 VSTM4 ENSG00000226576 FAM170B-AS1 C10orf71 C10orf71-AS1 LOC105378298 GC10M049015 PIR36323
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around FAM170B-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM170B-AS1 Gene

Chromosome:
10
Start:
49,121,839 bp from pter
End:
49,151,547 bp from pter
Size:
29,709 bases
Orientation:
Plus strand

Genomic View for FAM170B-AS1 Gene

Genes around FAM170B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM170B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM170B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM170B-AS1 Gene

Proteins for FAM170B-AS1 Gene

Post-translational modifications for FAM170B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM170B-AS1 Gene

Domains & Families for FAM170B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM170B-AS1 Gene

Function for FAM170B-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM170B-AS1 Gene

Localization for FAM170B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM170B-AS1 Gene

Pathways & Interactions for FAM170B-AS1 Gene

SuperPathways for FAM170B-AS1 Gene

No Data Available

Interacting Proteins for FAM170B-AS1 Gene

Gene Ontology (GO) - Biological Process for FAM170B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM170B-AS1 Gene

Transcripts for FAM170B-AS1 Gene

mRNA/cDNA for FAM170B-AS1 Gene

(3) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM170B-AS1 Gene

FAM170B antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM170B-AS1 Gene

No ASD Table

Relevant External Links for FAM170B-AS1 Gene

GeneLoc Exon Structure for
FAM170B-AS1
ECgene alternative splicing isoforms for
FAM170B-AS1

Expression for FAM170B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM170B-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FAM170B-AS1 Gene

This gene is overexpressed in Testis (x46.6).

SOURCE GeneReport for Unigene cluster for FAM170B-AS1 Gene:

Hs.404175
genes like me logo Genes that share expression patterns with FAM170B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FAM170B-AS1 Gene

Orthologs for FAM170B-AS1 Gene

Evolution for FAM170B-AS1 Gene

ENSEMBL:
Gene Tree for FAM170B-AS1 (if available)
TreeFam:
Gene Tree for FAM170B-AS1 (if available)

No data available for Orthologs for FAM170B-AS1 Gene

Paralogs for FAM170B-AS1 Gene

No data available for Paralogs for FAM170B-AS1 Gene

Variants for FAM170B-AS1 Gene

Sequence variations from dbSNP and Humsavar for FAM170B-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs10047366 -- 49,151,552(+) GTTTT(C/T)GCATA downstream-variant-500B
rs10218920 -- 49,135,397(+) tgtgt(A/G)tctca intron-variant, upstream-variant-2KB
rs10218995 -- 49,134,977(+) TCCCA(A/G)TGTGG intron-variant, upstream-variant-2KB
rs10532950 -- 49,120,534(+) AGGTA(-/ACAC)ACACA intron-variant, upstream-variant-2KB
rs10622659 -- 49,148,874(+) tgtgt(A/G)tatat intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM170B-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1119274 CNV deletion 17803354
esv2761593 CNV gain 21179565
esv3546258 CNV deletion 23714750
esv3623164 CNV loss 21293372
nsv1042677 CNV loss 25217958
nsv831866 CNV gain+loss 17160897

Relevant External Links for FAM170B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM170B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM170B-AS1 Gene

Disorders for FAM170B-AS1 Gene

Relevant External Links for FAM170B-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM170B-AS1

No disorders were found for FAM170B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM170B-AS1 Gene

Publications for FAM170B-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FAM170B-AS1 Gene

Sources for FAM170B-AS1 Gene

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