Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FAM170B-AS1 Gene

Subcategory (RNA class) for FAM170B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM170B-AS1 Gene

  • FAM170B Antisense RNA 1 2 3 5

External Ids for FAM170B-AS1 Gene

Previous GeneCards Identifiers for FAM170B-AS1 Gene

  • GC10P050331

Summaries for FAM170B-AS1 Gene

GeneCards Summary for FAM170B-AS1 Gene

FAM170B-AS1 (FAM170B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM170B-AS1 Gene

Genomics for FAM170B-AS1 Gene

Regulatory Elements for FAM170B-AS1 Gene

Enhancers for FAM170B-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F049008 1.2 Ensembl ENCODE 11.4 -112.0 -112007 3.4 ATF1 ARID4B YY1 ZNF766 GATA2 SP5 MIER2 PPARG KAT8 NFIL3 VSTM4 FAM170B ENSG00000226576 FAM170B-AS1 WDFY4 DRGX LRRC18 ENSG00000241577 GC10M049015 LOC105378298
GH10F049078 1 Ensembl ENCODE 11.5 -41.2 -41247 3.3 HLF MAX MAFG ZIC2 RAD21 TEAD3 YY1 ARID1B ZNF316 SMARCA4 FAM170B VSTM4 FAM170B-AS1 PIR51510 PIR36323
GH10F049082 1 Ensembl ENCODE 11.4 -38.3 -38283 2.2 CTCF ATF1 PKNOX1 ARNT JUNB TRIM22 REST RAD21 NR2F2 RAD51 FAM170B VSTM4 FAM170B-AS1 LRRC18 PIR51510 PIR36323
GH10F049023 0.9 Ensembl ENCODE 11.3 -97.2 -97216 2.4 SOX13 TFAP4 MTA2 NR2F1 JUNB MLLT1 NR2F6 TBX21 ZNF644 VSTM4 ENSG00000226576 FAM170B-AS1 C10orf71 C10orf71-AS1 LOC105378298 GC10M049015 PIR36323
GH10F049169 0.6 FANTOM5 Ensembl 11.5 +47.5 47462 0.6 FAM170B FAM170B-AS1 C10orf128
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM170B-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM170B-AS1 Gene

Chromosome:
10
Start:
49,121,839 bp from pter
End:
49,151,547 bp from pter
Size:
29,709 bases
Orientation:
Plus strand

Genomic View for FAM170B-AS1 Gene

Genes around FAM170B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM170B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM170B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM170B-AS1 Gene

Proteins for FAM170B-AS1 Gene

Post-translational modifications for FAM170B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM170B-AS1 Gene

Domains & Families for FAM170B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM170B-AS1 Gene

Function for FAM170B-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM170B-AS1 Gene

Localization for FAM170B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM170B-AS1 Gene

Pathways & Interactions for FAM170B-AS1 Gene

SuperPathways for FAM170B-AS1 Gene

No Data Available

Interacting Proteins for FAM170B-AS1 Gene

Gene Ontology (GO) - Biological Process for FAM170B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM170B-AS1 Gene

Transcripts for FAM170B-AS1 Gene

mRNA/cDNA for FAM170B-AS1 Gene

(3) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM170B-AS1 Gene

FAM170B antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM170B-AS1 Gene

No ASD Table

Relevant External Links for FAM170B-AS1 Gene

GeneLoc Exon Structure for
FAM170B-AS1
ECgene alternative splicing isoforms for
FAM170B-AS1

Expression for FAM170B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM170B-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FAM170B-AS1 Gene

This gene is overexpressed in Testis (x46.6).

SOURCE GeneReport for Unigene cluster for FAM170B-AS1 Gene:

Hs.404175
genes like me logo Genes that share expression patterns with FAM170B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FAM170B-AS1 Gene

Orthologs for FAM170B-AS1 Gene

Evolution for FAM170B-AS1 Gene

ENSEMBL:
Gene Tree for FAM170B-AS1 (if available)
TreeFam:
Gene Tree for FAM170B-AS1 (if available)

No data available for Orthologs for FAM170B-AS1 Gene

Paralogs for FAM170B-AS1 Gene

No data available for Paralogs for FAM170B-AS1 Gene

Variants for FAM170B-AS1 Gene

Sequence variations from dbSNP and Humsavar for FAM170B-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs10047366 -- 49,151,552(+) GTTTT(C/T)GCATA downstream-variant-500B
rs10218920 -- 49,135,397(+) tgtgt(A/G)tctca intron-variant, upstream-variant-2KB
rs10218995 -- 49,134,977(+) TCCCA(A/G)TGTGG intron-variant, upstream-variant-2KB
rs10532950 -- 49,120,534(+) AGGTA(-/ACAC)ACACA intron-variant, upstream-variant-2KB
rs10622659 -- 49,148,874(+) tgtgt(A/G)tatat intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM170B-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv831866 CNV gain+loss 17160897
nsv1042677 CNV loss 25217958
esv3623164 CNV loss 21293372
esv3546258 CNV deletion 23714750
esv2761593 CNV gain 21179565
esv1119274 CNV deletion 17803354

Relevant External Links for FAM170B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM170B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM170B-AS1 Gene

Disorders for FAM170B-AS1 Gene

Relevant External Links for FAM170B-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM170B-AS1

No disorders were found for FAM170B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM170B-AS1 Gene

Publications for FAM170B-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FAM170B-AS1 Gene

Sources for FAM170B-AS1 Gene

Content
Loading form....