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Aliases for FAM170B-AS1 Gene

Subcategory (RNA class) for FAM170B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM170B-AS1 Gene

  • FAM170B Antisense RNA 1 2 3 5

External Ids for FAM170B-AS1 Gene

Previous GeneCards Identifiers for FAM170B-AS1 Gene

  • GC10P050331

Summaries for FAM170B-AS1 Gene

GeneCards Summary for FAM170B-AS1 Gene

FAM170B-AS1 (FAM170B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAM170B-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM170B-AS1 Gene

Genomics for FAM170B-AS1 Gene

Regulatory Elements for FAM170B-AS1 Gene

Enhancers for FAM170B-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H049078 1.3 Ensembl ENCODE dbSUPER 11.5 -41.2 -41247 3.3 FOXA2 MAX ZIC2 RAD21 YY1 TEAD3 ZNF316 HNF4G MAFK HLF FAM170B VSTM4 FAM170B-AS1 PIR51510 PIR36323
GH10H049076 0.8 dbSUPER 11.5 -45.0 -45022 1.2 PKNOX1 FOXA2 MAX BATF RAD21 RELA YY1 EED ATF7 ETV6 FAM170B VSTM4 FAM170B-AS1 LRRC18 PIR51510 PIR36323
GH10H049082 0.8 ENCODE dbSUPER 11.4 -38.3 -38283 2.2 POLR2A SCRT2 HNF4A SPI1 NR2F2 FAM170B VSTM4 FAM170B-AS1 LRRC18 PIR51510 PIR36323
GH10H049023 0.8 Ensembl ENCODE 11.3 -97.2 -97216 2.4 TFAP4 NR2F1 HNF4A NR2F6 VSTM4 ENSG00000226576 FAM170B-AS1 C10orf71 C10orf71-AS1 LOC105378298 GC10M049015 PIR36323
GH10H049169 0.6 FANTOM5 dbSUPER 11.4 +47.5 47465 0.1 FAM170B-AS1 C10orf128 FAM170B
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM170B-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FAM170B-AS1 Gene

Genomic Locations for FAM170B-AS1 Gene
chr10:49,121,839-49,151,547
(GRCh38/hg38)
Size:
29,709 bases
Orientation:
Plus strand
chr10:50,329,884-50,359,592
(GRCh37/hg19)

Genomic View for FAM170B-AS1 Gene

Genes around FAM170B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM170B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM170B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM170B-AS1 Gene

Proteins for FAM170B-AS1 Gene

Post-translational modifications for FAM170B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM170B-AS1 Gene

Domains & Families for FAM170B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM170B-AS1 Gene

Function for FAM170B-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM170B-AS1 Gene

Localization for FAM170B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM170B-AS1 Gene

Pathways & Interactions for FAM170B-AS1 Gene

SuperPathways for FAM170B-AS1 Gene

No Data Available

Interacting Proteins for FAM170B-AS1 Gene

Gene Ontology (GO) - Biological Process for FAM170B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM170B-AS1 Gene

Drugs & Compounds for FAM170B-AS1 Gene

No Compound Related Data Available

Transcripts for FAM170B-AS1 Gene

mRNA/cDNA for FAM170B-AS1 Gene

(3) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM170B-AS1 Gene

FAM170B antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM170B-AS1 Gene

No ASD Table

Relevant External Links for FAM170B-AS1 Gene

GeneLoc Exon Structure for
FAM170B-AS1
ECgene alternative splicing isoforms for
FAM170B-AS1

Expression for FAM170B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM170B-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FAM170B-AS1 Gene

This gene is overexpressed in Testis (x46.6).

SOURCE GeneReport for Unigene cluster for FAM170B-AS1 Gene:

Hs.404175
genes like me logo Genes that share expression patterns with FAM170B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM170B-AS1 Gene

Orthologs for FAM170B-AS1 Gene

Evolution for FAM170B-AS1 Gene

ENSEMBL:
Gene Tree for FAM170B-AS1 (if available)
TreeFam:
Gene Tree for FAM170B-AS1 (if available)

No data available for Orthologs for FAM170B-AS1 Gene

Paralogs for FAM170B-AS1 Gene

No data available for Paralogs for FAM170B-AS1 Gene

Variants for FAM170B-AS1 Gene

Sequence variations from dbSNP and Humsavar for FAM170B-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000321421 -- 49,128,533(+) AATTC(A/T)CCCTG intron-variant
rs1000362803 -- 49,149,364(+) CTTTT(G/T)AGCCT intron-variant
rs1000380010 -- 49,120,952(+) CGTGC(C/T)TGTGC intron-variant, upstream-variant-2KB
rs1000406652 -- 49,149,558(+) CCTCT(A/G)TCTTC intron-variant
rs1000451875 -- 49,151,231(+) GAGCA(C/T)ACTAC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM170B-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv831866 CNV gain+loss 17160897
nsv1042677 CNV loss 25217958
esv3623164 CNV loss 21293372
esv3546258 CNV deletion 23714750
esv2761593 CNV gain 21179565
esv1119274 CNV deletion 17803354

Relevant External Links for FAM170B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM170B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM170B-AS1 Gene

Disorders for FAM170B-AS1 Gene

Relevant External Links for FAM170B-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM170B-AS1

No disorders were found for FAM170B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM170B-AS1 Gene

Publications for FAM170B-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for FAM170B-AS1 Gene

Sources for FAM170B-AS1 Gene

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