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Aliases for FAM168A Gene

Aliases for FAM168A Gene

  • Family With Sequence Similarity 168 Member A 2 3 5
  • Tongue Cancer Chemotherapy Resistance-Associated Protein 1 2 3 4
  • KIAA0280 2 3 4
  • Family With Sequence Similarity 168, Member A 2 3
  • TCRP1 3 4

External Ids for FAM168A Gene

Previous HGNC Symbols for FAM168A Gene

  • KIAA0280

Previous GeneCards Identifiers for FAM168A Gene

  • GC11U901028
  • GC11M072795
  • GC11M073117
  • GC11M069412
  • GC11M073111

Summaries for FAM168A Gene

GeneCards Summary for FAM168A Gene

FAM168A (Family With Sequence Similarity 168 Member A) is a Protein Coding gene. Diseases associated with FAM168A include Tongue Cancer and Oral Squamous Cell Carcinoma. An important paralog of this gene is FAM168B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM168A Gene

Genomics for FAM168A Gene

Regulatory Elements for FAM168A Gene

Enhancers for FAM168A Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around FAM168A on UCSC Golden Path with GeneCards custom track

Promoters for FAM168A Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around FAM168A on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM168A Gene

Chromosome:
11
Start:
73,400,478 bp from pter
End:
73,598,189 bp from pter
Size:
197,712 bases
Orientation:
Minus strand

Genomic View for FAM168A Gene

Genes around FAM168A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM168A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM168A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM168A Gene

Proteins for FAM168A Gene

  • Protein details for FAM168A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q92567-F168A_HUMAN
    Recommended name:
    Protein FAM168A
    Protein Accession:
    Q92567
    Secondary Accessions:
    • A2ICY2
    • A2ID81
    • Q86UG2

    Protein attributes for FAM168A Gene

    Size:
    244 amino acids
    Molecular mass:
    26184 Da
    Quaternary structure:
    • May interact with FAM168B.
    SequenceCaution:
    • Sequence=BAA13408.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for FAM168A Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FAM168A Gene

Proteomics data for FAM168A Gene at MOPED

Post-translational modifications for FAM168A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM168A Gene

No data available for DME Specific Peptides for FAM168A Gene

Domains & Families for FAM168A Gene

Protein Domains for FAM168A Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM168A Gene

Graphical View of Domain Structure for InterPro Entry

Q92567

UniProtKB/Swiss-Prot:

F168A_HUMAN :
  • Belongs to the FAM168 family.
Family:
  • Belongs to the FAM168 family.
genes like me logo Genes that share domains with FAM168A: view

No data available for Gene Families for FAM168A Gene

Function for FAM168A Gene

Phenotypes for FAM168A Gene

genes like me logo Genes that share phenotypes with FAM168A: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FAM168A Gene

Localization for FAM168A Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM168A Gene COMPARTMENTS Subcellular localization image for FAM168A gene
Compartment Confidence
nucleus 3
cytosol 2
extracellular 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM168A Gene

Pathways & Interactions for FAM168A Gene

SuperPathways for FAM168A Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM168A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM168A Gene

Drugs & Compounds for FAM168A Gene

No Compound Related Data Available

Transcripts for FAM168A Gene

Unigene Clusters for FAM168A Gene

Family with sequence similarity 168, member A:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM168A Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9
SP1: -
SP2: - -
SP3:

Relevant External Links for FAM168A Gene

GeneLoc Exon Structure for
FAM168A
ECgene alternative splicing isoforms for
FAM168A

Expression for FAM168A Gene

mRNA expression in normal human tissues for FAM168A Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for FAM168A Gene

This gene is overexpressed in Fetal Brain (24.9), Retina (16.8), Prostate (12.3), and Frontal cortex (6.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for FAM168A Gene



SOURCE GeneReport for Unigene cluster for FAM168A Gene Hs.475334

genes like me logo Genes that share expression patterns with FAM168A: view

Protein tissue co-expression partners for FAM168A Gene

- Elite partner

Primer Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for FAM168A Gene

Orthologs for FAM168A Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM168A Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia FAM168A 35
  • 95.32 (n)
  • 99.57 (a)
FAM168A 36
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FAM168A 35
  • 95.63 (n)
  • 99.59 (a)
FAM168A 36
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fam168a 35
  • 94.89 (n)
  • 100 (a)
Fam168a 16
Fam168a 36
  • 100 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia FAM168A 35
  • 99.73 (n)
  • 100 (a)
FAM168A 36
  • 96 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fam168a 35
  • 94.95 (n)
  • 99.59 (a)
oppossum
(Monodelphis domestica)
Mammalia FAM168A 36
  • 78 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FAM168A 36
  • 85 (a)
OneToOne
chicken
(Gallus gallus)
Aves FAM168A 35
  • 81.28 (n)
  • 94.89 (a)
FAM168A 36
  • 94 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FAM168A 36
  • 93 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia fam168a 35
  • 80.43 (n)
  • 91.49 (a)
Str.4204 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.13176 35
zebrafish
(Danio rerio)
Actinopterygii fam168a 35
  • 75.21 (n)
  • 83.76 (a)
wufc28c05 35
fam168a 36
  • 79 (a)
OneToOne
Species with no ortholog for FAM168A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM168A Gene

ENSEMBL:
Gene Tree for FAM168A (if available)
TreeFam:
Gene Tree for FAM168A (if available)

Paralogs for FAM168A Gene

Paralogs for FAM168A Gene

(1) SIMAP similar genes for FAM168A Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM168A: view

Variants for FAM168A Gene

Sequence variations from dbSNP and Humsavar for FAM168A Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs519684 -- 73,475,495(-) TCTTT(G/T)GGGCA intron-variant
rs528026 -- 73,481,402(+) CCAGG(G/T)TTTCA intron-variant
rs533217 -- 73,480,664(+) CTTAT(A/G)AAGAG intron-variant
rs535140 -- 73,430,308(-) acccc(G/T)tggga intron-variant
rs539208 -- 73,437,274(-) ctaag(A/G)ataca intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM168A Gene

Variant ID Type Subtype PubMed ID
esv2677115 CNV Deletion 23128226
nsv508641 CNV Loss 20534489
nsv520130 CNV Gain 19592680
nsv389 CNV Insertion 18451855
nsv38888 CNV Insertion 16902084
esv271125 CNV Insertion 20981092
esv22737 CNV Loss 19812545

Variation tolerance for FAM168A Gene

Residual Variation Intolerance Score: 20.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.50; 10.96% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for FAM168A Gene

Disorders for FAM168A Gene

MalaCards: The human disease database

(2) MalaCards diseases for FAM168A Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
tongue cancer
  • malignant neoplasm of anterior 2/3 of tongue unspecified
oral squamous cell carcinoma
  • mouth squamous cell carcinoma
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for FAM168A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM168A
genes like me logo Genes that share disorders with FAM168A: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FAM168A Gene

Publications for FAM168A Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 67
  2. TCRP1 contributes to cisplatin resistance by preventing Pol I^ degradation in lung cancer cells. (PMID: 25260657) Liu X. … He Z. (Mol. Cell. Biochem. 2015) 3
  3. Quantitative Proteomics Reveals Dynamic Interactions of the Minichromosome Maintenance Complex (MCM) in the Cellular Response to Etoposide Induced DNA Damage. (PMID: 25963833) Drissi R. … Boisvert F.M. (Mol. Cell Proteomics 2015) 3
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  5. Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism. (PMID: 24722188) Corominas R. … Iakoucheva L.M. (Nat. Commun. 2014) 3

Products for FAM168A Gene

Sources for FAM168A Gene

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