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Aliases for FAM167B Gene

Aliases for FAM167B Gene

  • Family With Sequence Similarity 167, Member B 2 3
  • C1orf90 3 4
  • Chromosome 1 Open Reading Frame 90 2
  • Protein FAM167B 3

External Ids for FAM167B Gene

Previous HGNC Symbols for FAM167B Gene

  • C1orf90

Previous GeneCards Identifiers for FAM167B Gene

  • GC01P032487
  • GC01P032712
  • GC01P030829

Summaries for FAM167B Gene

GeneCards Summary for FAM167B Gene

FAM167B (Family With Sequence Similarity 167, Member B) is a Protein Coding gene. An important paralog of this gene is FAM167A.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM167B Gene

Genomics for FAM167B Gene

Regulatory Elements for FAM167B Gene

Genomic Location for FAM167B Gene

Start:
32,247,217 bp from pter
End:
32,248,860 bp from pter
Size:
1,644 bases
Orientation:
Plus strand

Genomic View for FAM167B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM167B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM167B Gene

Proteins for FAM167B Gene

  • Protein details for FAM167B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BTA0-F167B_HUMAN
    Recommended name:
    Protein FAM167B
    Protein Accession:
    Q9BTA0
    Secondary Accessions:
    • Q5TDH6

    Protein attributes for FAM167B Gene

    Size:
    163 amino acids
    Molecular mass:
    18414 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM167B Gene

Proteomics data for FAM167B Gene at MOPED

Post-translational modifications for FAM167B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM167B Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FAM167B Gene

Domains for FAM167B Gene

Protein Domains for FAM167B Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM167B Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BTA0

UniProtKB/Swiss-Prot:

F167B_HUMAN :
  • Q9BTA0
Family:
  • Belongs to the FAM167 (SEC) family.
genes like me logo Genes that share domains with FAM167B: view

No data available for Gene Families for FAM167B Gene

Function for FAM167B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM167B Gene

Localization for FAM167B Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM167B Gene COMPARTMENTS Subcellular localization image for FAM167B gene
Compartment Confidence
extracellular 2
cytosol 1
mitochondrion 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM167B Gene

Pathways for FAM167B Gene

SuperPathways for FAM167B Gene

No Data Available

Interacting Proteins for FAM167B Gene

Gene Ontology (GO) - Biological Process for FAM167B Gene

None

No data available for Pathways by source for FAM167B Gene

Transcripts for FAM167B Gene

mRNA/cDNA for FAM167B Gene

(1) REFSEQ mRNAs :
(7) Selected AceView cDNA sequences:
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM167B Gene

Family with sequence similarity 167, member B:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM167B Gene

No ASD Table

Relevant External Links for FAM167B Gene

GeneLoc Exon Structure for
FAM167B
ECgene alternative splicing isoforms for
FAM167B

Expression for FAM167B Gene

mRNA expression in normal human tissues for FAM167B Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for FAM167B Gene

This gene is overexpressed in Kidney - Cortex (4.7).

SOURCE GeneReport for Unigene cluster for FAM167B Gene Hs.18449

genes like me logo Genes that share expressions with FAM167B: view

No data available for Protein expression and mRNA Expression by UniProt/SwissProt for FAM167B Gene

Orthologs for FAM167B Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM167B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM167B 35
  • 99.8 (n)
  • 100 (a)
FAM167B 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FAM167B 35
  • 90.12 (n)
  • 90.12 (a)
FAM167B 36
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FAM167B 35
  • 90.39 (n)
  • 90.8 (a)
FAM167B 36
  • 90 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fam167b 35
  • 84.16 (n)
  • 86.42 (a)
Fam167b 16
Fam167b 36
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia FAM167B 36
  • 53 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FAM167B 36
  • 56 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fam167b 35
  • 87.04 (n)
  • 89.51 (a)
chicken
(Gallus gallus)
Aves FAM167B 35
  • 66.05 (n)
  • 54.94 (a)
FAM167B 36
  • 48 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FAM167B 36
  • 51 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100497502 35
  • 55.62 (n)
  • 52.76 (a)
zebrafish
(Danio rerio)
Actinopterygii FAM167B 36
  • 45 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 17 (a)
ManyToMany
CSA.10625 36
  • 31 (a)
ManyToMany
Species with no ortholog for FAM167B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM167B Gene

ENSEMBL:
Gene Tree for FAM167B (if available)
TreeFam:
Gene Tree for FAM167B (if available)

Paralogs for FAM167B Gene

Paralogs for FAM167B Gene

Selected SIMAP similar genes for FAM167B Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM167B: view

Variants for FAM167B Gene

Sequence variations from dbSNP and Humsavar for FAM167B Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs669538 -- 32,245,759(+) GAAGG(C/T)ATATA upstream-variant-2KB
rs2291063 -- 32,247,598(-) TTGGC(C/T)TGGGC reference, synonymous-codon
rs3954186 -- 32,249,206(-) gtggc(C/T)gcctg downstream-variant-500B
rs11567839 -- 32,247,640(+) GGTTT(C/T)GACTC reference, synonymous-codon
rs11567840 -- 32,247,709(+) GCTTT(G/T)CCCAG intron-variant

Relevant External Links for FAM167B Gene

HapMap Linkage Disequilibrium report
FAM167B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for FAM167B Gene

Disorders for FAM167B Gene

Relevant External Links for FAM167B

Genetic Association Database (GAD)
FAM167B
Human Genome Epidemiology (HuGE) Navigator
FAM167B
genes like me logo Genes that share disorders with FAM167B: view

No data available for UniProtKB/Swiss-Prot for FAM167B Gene

Publications for FAM167B Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4
  4. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey S.D. … Anand S. (Diabetes Care 2010) 3 48
  5. Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip. (PMID: 19913121) Talmud P.J. … . (Am. J. Hum. Genet. 2009) 3

Products for FAM167B Gene

Sources for FAM167B Gene

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