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Aliases for FAM167A-AS1 Gene

Subcategory (RNA class) for FAM167A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM167A-AS1 Gene

  • FAM167A Antisense RNA 1 2 3 4 5
  • C8orf12 3 4
  • Chromosome 8 Open Reading Frame 12 2
  • FAM167A Antisense Gene Protein 1 4

External Ids for FAM167A-AS1 Gene

Previous HGNC Symbols for FAM167A-AS1 Gene

  • C8orf12

Summaries for FAM167A-AS1 Gene

GeneCards Summary for FAM167A-AS1 Gene

FAM167A-AS1 (FAM167A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with FAM167A-AS1 include Keratolytic Winter Erythema.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM167A-AS1 Gene

Genomics for FAM167A-AS1 Gene

Regulatory Elements for FAM167A-AS1 Gene

Enhancers for FAM167A-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G011416 1.4 Ensembl ENCODE dbSUPER 11 +49.3 49336 2.3 HDGF PKNOX1 FOXA2 TBL1XR1 WRNIP1 RELB ETV6 IKZF2 CREM CBFB FAM167A BLK LOC105379241 FAM167A-AS1 ENSG00000255020 TDH ENSG00000255310 ENSG00000255518 ALG1L11P PIR51526
GH08G011425 1.4 FANTOM5 ENCODE 10.3 +58.6 58617 3.8 PKNOX1 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 CBX5 FAM167A ENSG00000255518 FAM66A BLK LOC105379241 ENSG00000255354 FAM167A-AS1 FAM90A2P RNU6-1084P ENSG00000255310
GH08G011696 2.4 VISTA FANTOM5 Ensembl ENCODE dbSUPER 4.6 +341.0 341039 25.1 HDGF PKNOX1 FOXA2 ARNT MLX ZFP64 ARID4B SIN3A DMAP1 FEZF1 GATA4 RPS3AP34 FAM90A2P ENSG00000255354 ENSG00000255518 LOC105379241 BLK FAM66A MTMR9 FAM167A
GH08G011440 1 ENCODE dbSUPER 10.8 +72.0 72005 0.2 MTA2 NR2F1 JUNB BMI1 TBX21 GABPA ARID3A POLR2A SMARCA4 GLIS1 FAM167A RNU6-1084P FAM167A-AS1 BLK LOC105379241 PIR35143
GH08G011441 1 ENCODE dbSUPER 10.8 +71.8 71805 0.2 PKNOX1 BMI1 ARID3A POLR2A CBX5 EED RELB CREM IKZF2 MTA2 FAM167A RNU6-1084P FAM167A-AS1 BLK LOC105379241 PIR35143
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM167A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM167A-AS1 Gene

Chromosome:
8
Start:
11,368,402 bp from pter
End:
11,438,658 bp from pter
Size:
70,257 bases
Orientation:
Plus strand

Genomic View for FAM167A-AS1 Gene

Genes around FAM167A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM167A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM167A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM167A-AS1 Gene

Proteins for FAM167A-AS1 Gene

  • Protein details for FAM167A-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96KT0-FAAS1_HUMAN
    Recommended name:
    Uncharacterized protein FAM167A-AS1
    Protein Accession:
    Q96KT0

    Protein attributes for FAM167A-AS1 Gene

    Size:
    104 amino acids
    Molecular mass:
    11632 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM167A-AS1 Gene

Post-translational modifications for FAM167A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM167A-AS1 Gene

Domains & Families for FAM167A-AS1 Gene

Protein Domains for FAM167A-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FAM167A-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM167A-AS1 Gene

Function for FAM167A-AS1 Gene

Phenotypes for FAM167A-AS1 Gene

GenomeRNAi human phenotypes for FAM167A-AS1:
genes like me logo Genes that share phenotypes with FAM167A-AS1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM167A-AS1 Gene

Localization for FAM167A-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FAM167A-AS1 gene
Compartment Confidence
nucleus 2
plasma membrane 1
extracellular 1
mitochondrion 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM167A-AS1 Gene

Pathways & Interactions for FAM167A-AS1 Gene

SuperPathways for FAM167A-AS1 Gene

No Data Available

Interacting Proteins for FAM167A-AS1 Gene

Gene Ontology (GO) - Biological Process for FAM167A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM167A-AS1 Gene

Drugs & Compounds for FAM167A-AS1 Gene

No Compound Related Data Available

Transcripts for FAM167A-AS1 Gene

mRNA/cDNA for FAM167A-AS1 Gene

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM167A-AS1 Gene

No ASD Table

Relevant External Links for FAM167A-AS1 Gene

GeneLoc Exon Structure for
FAM167A-AS1
ECgene alternative splicing isoforms for
FAM167A-AS1

Expression for FAM167A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM167A-AS1 Gene

genes like me logo Genes that share expression patterns with FAM167A-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM167A-AS1 Gene

Orthologs for FAM167A-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for FAM167A-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C8orf12 35
  • 98 (a)
OneToOne
Species where no ortholog for FAM167A-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FAM167A-AS1 Gene

ENSEMBL:
Gene Tree for FAM167A-AS1 (if available)
TreeFam:
Gene Tree for FAM167A-AS1 (if available)

Paralogs for FAM167A-AS1 Gene

No data available for Paralogs for FAM167A-AS1 Gene

Variants for FAM167A-AS1 Gene

Sequence variations from dbSNP and Humsavar for FAM167A-AS1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000014675 -- 11,366,859(+) AATCA(C/G)TAGGA intron-variant, upstream-variant-2KB
rs1000020018 -- 11,367,126(+) GGTTT(A/G)TGTTT intron-variant, upstream-variant-2KB
rs1000055083 -- 11,419,202(+) GATAT(-/GTTA)GTTAG intron-variant
rs1000090828 -- 11,423,191(+) CGGGT(C/G)TGGCC intron-variant, utr-variant-3-prime
rs1000110956 -- 11,438,664(+) TTTCC(C/T)TTCCT intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for FAM167A-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1171n67 CNV loss 20364138
dgv11954n54 CNV loss 21841781
dgv11955n54 CNV loss 21841781
dgv11956n54 CNV loss 21841781
dgv178e180 CNV deletion 20482838
dgv179e180 CNV loss 20482838
dgv3771n106 CNV deletion 24896259
dgv3772n106 CNV deletion 24896259
dgv56n50 CNV loss 21212237
esv2383612 CNV deletion 18987734
esv25027 CNV loss 19812545
esv2645386 CNV deletion 19546169
esv2659992 CNV deletion 23128226
esv3273496 CNV deletion 24192839
esv3302913 CNV tandem duplication 20981092
esv33097 CNV gain 17666407
esv33920 CNV loss 17666407
esv34097 CNV loss 18971310
esv3543052 CNV deletion 23714750
esv3572512 CNV loss 25503493
esv3616248 CNV loss 21293372
esv3616249 CNV loss 21293372
nsv1030756 CNV gain 25217958
nsv1033312 CNV loss 25217958
nsv1115062 CNV deletion 24896259
nsv398266 CNV deletion 16902084
nsv465465 CNV loss 19166990
nsv470183 CNV loss 18288195
nsv471964 CNV novel sequence insertion 20440878
nsv475649 CNV novel sequence insertion 20440878
nsv509252 CNV insertion 20534489
nsv522860 CNV loss 19592680
nsv610274 CNV loss 21841781
nsv610275 CNV loss 21841781
nsv610278 CNV gain+loss 21841781
nsv824534 CNV loss 20364138
nsv831233 CNV gain 17160897
nsv951099 CNV deletion 24416366
nsv982122 CNV deletion 23825009

Variation tolerance for FAM167A-AS1 Gene

Gene Damage Index Score: 3.18; 51.89% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FAM167A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM167A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM167A-AS1 Gene

Disorders for FAM167A-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for FAM167A-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
keratolytic winter erythema
  • erythrokeratolysis hiemalis ichthyosis
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for FAM167A-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM167A-AS1
genes like me logo Genes that share disorders with FAM167A-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FAM167A-AS1 Gene

Publications for FAM167A-AS1 Gene

  1. Common genetic variation and performance on standardized cognitive tests. (PMID: 20125193) Cirulli E.T. … Goldstein D.B. (Eur. J. Hum. Genet. 2010) 3 64
  2. DNA sequence and analysis of human chromosome 8. (PMID: 16421571) Nusbaum C. … Lander E.S. (Nature 2006) 4 64
  3. Physical and transcriptional map of the critical region for keratolytic winter erythema (KWE) on chromosome 8p22-p23 between D8S550 and D8S1759. (PMID: 11896452) Appel S. … Rosenthal A. (Eur. J. Hum. Genet. 2002) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FAM167A-AS1 Gene

Sources for FAM167A-AS1 Gene

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